Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-162 575.5 297 100.0
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.8e-157 557.0 297 97.0
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.3e-154 547.7 297 95.6
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.5e-119 433.3 297 79.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 6.8e-117 424.5 297 78.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.5e-111 406.8 288 76.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.8e-110 402.5 297 73.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.8e-110 402.5 297 73.7
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.6e-108 396.0 297 72.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 4.9e-107 391.7 297 73.1
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.3e-78 297.4 291 60.1
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.4e-76 289.3 303 58.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 3.8e-75 285.8 299 57.2
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.9e-75 285.4 299 58.2
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.2e-74 282.3 303 57.4
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.7e-73 279.6 266 62.0
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.5e-73 279.3 297 56.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.0e-72 276.2 268 60.8
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 3.9e-72 275.8 296 56.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.9e-71 273.5 284 57.4
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 3.3e-71 272.7 287 57.8
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 7.4e-71 271.6 299 57.5
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.8e-70 269.6 286 57.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 4.8e-70 268.9 273 59.0
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.6e-68 263.1 298 55.7
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-67 260.0 298 55.4
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.0e-67 258.8 300 56.0
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.4e-66 257.3 302 54.3
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.4e-66 257.3 296 53.0
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.9e-66 256.9 278 57.9
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.6e-65 252.7 278 56.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 8.8e-64 248.1 295 52.2
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.3e-63 246.1 255 58.8
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.7e-63 245.4 265 57.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 5.7e-63 245.4 305 54.1
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 7.4e-63 245.0 299 53.2
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.9e-59 233.0 297 50.8
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.9e-59 233.0 288 52.1
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.5e-58 229.9 304 51.0
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.2e-58 228.4 295 49.5
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.4e-58 228.0 293 49.5
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.3e-56 223.4 299 51.2
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.3e-56 223.4 266 52.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.0e-56 223.0 275 54.9
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.1e-56 222.2 291 48.5
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.1e-56 222.2 303 48.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.6e-55 219.9 293 48.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.4e-55 219.2 299 51.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.7e-55 218.0 292 49.3
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 5.3e-53 212.2 292 47.9
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 7.7e-52 208.4 310 50.0
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.3e-51 207.6 282 47.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 3.8e-51 206.1 280 51.4
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.1e-49 200.3 268 50.4
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.4e-48 197.6 283 46.3
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 7.4e-47 191.8 266 48.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 8.2e-46 188.3 294 47.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-45 187.2 219 55.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-45 186.4 253 49.4
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.1e-45 186.0 259 49.4
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.9e-42 177.2 224 51.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 6.8e-40 168.7 287 44.6
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.7e-39 165.6 275 44.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-38 163.7 240 47.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.7e-38 162.9 291 43.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 6.3e-38 162.2 287 43.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.3e-38 162.2 303 43.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 8.3e-38 161.8 285 41.8
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 3.1e-37 159.8 294 40.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.6e-36 157.5 297 39.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.5e-36 156.4 294 41.5
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.5e-36 156.0 278 41.7
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 5.9e-36 155.6 209 47.4
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 7.7e-36 155.2 268 43.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.2e-35 153.7 294 41.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.5e-35 151.8 315 41.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.7e-33 146.7 302 40.7
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 8.0e-33 145.2 145 60.0
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.8e-32 144.1 241 44.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.0e-32 143.3 144 59.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-32 143.3 144 59.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-32 143.3 144 59.7
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-31 141.0 144 58.3
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.0e-31 140.6 294 39.1
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.0e-31 140.6 144 57.6
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.6e-31 140.2 279 39.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 3.7e-30 136.3 283 38.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.1e-29 133.3 288 37.5
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.2e-28 131.3 266 41.0
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.7e-28 130.2 286 42.0
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.5e-28 129.8 275 37.1
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 4.5e-28 129.4 193 47.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.9e-27 126.7 238 42.0
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.5e-26 124.4 259 35.9
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.3e-26 123.2 298 34.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 4.2e-26 122.9 295 33.9
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.8e-25 120.2 113 61.1
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 4.0e-24 116.3 272 36.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.0e-23 114.0 234 38.9
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.4e-23 113.2 302 34.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.7e-23 112.5 256 35.9
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.5e-23 112.1 176 44.9
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.3e-22 111.3 242 38.8
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-22 111.3 286 35.0
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.8e-22 110.2 283 36.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.8e-22 110.2 249 37.3
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 4.9e-22 109.4 277 33.9
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 6.3e-22 109.0 261 35.2
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 6.3e-22 109.0 265 35.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 8.3e-22 108.6 282 33.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.1e-21 108.2 82 68.3
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.4e-21 107.8 236 36.4
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.4e-21 107.1 275 32.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 4.1e-21 106.3 81 67.9
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 9.2e-21 105.1 245 35.5
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 9.2e-21 105.1 136 45.6
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.6e-20 104.4 107 57.0
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.9e-20 102.4 157 42.7
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 7.8e-20 102.1 288 34.4
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 7.8e-20 102.1 239 36.4
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.3e-19 101.3 261 36.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.3e-19 100.5 165 41.2
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 5.0e-19 99.4 279 33.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 8.6e-19 98.6 257 33.9
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.5e-18 97.8 265 36.2
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.5e-18 97.8 287 31.7
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.9e-18 97.4 280 34.6
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 5.6e-18 95.9 277 33.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 7.3e-18 95.5 101 55.4
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 9.5e-18 95.1 259 35.1
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.6e-17 94.4 119 51.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.6e-17 93.2 77 66.2
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.0e-16 91.7 372 27.7
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.0e-16 91.7 77 64.9
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.4e-16 91.3 71 69.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.4e-16 91.3 81 65.4
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.1e-16 90.1 250 32.8
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.2e-16 89.4 231 34.2
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.2e-16 89.4 118 46.6
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.5e-15 87.8 273 31.9
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.5e-15 87.8 77 62.3
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.5e-15 87.8 273 30.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.7e-14 84.3 181 37.6
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.9e-14 83.6 275 30.5
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 2.9e-14 83.6 157 40.8
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 8.3e-14 82.0 231 34.2
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.4e-13 81.3 79 55.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-13 80.9 248 34.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.4e-13 79.3 252 32.9
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.7e-12 77.0 115 40.0
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-12 75.9 269 32.7
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.0e-11 75.1 56 69.6
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.0e-11 75.1 278 31.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.3e-11 73.9 103 42.7
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 2.3e-11 73.9 147 36.1
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.9e-11 73.2 231 33.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 6.6e-11 72.4 131 39.7
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.6e-11 72.4 248 34.7
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.6e-11 72.0 232 32.8
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.9e-10 70.9 65 56.9
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.3e-10 70.1 255 29.4
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 3.3e-10 70.1 68 55.9
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 7.3e-10 68.9 259 28.6
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.5e-10 68.6 206 33.5
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.6e-09 67.8 179 30.2
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.1e-09 67.4 277 27.1
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.1e-09 67.4 216 31.0
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.8e-09 67.0 68 50.0
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.4e-08 64.7 130 36.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.8e-08 64.3 274 27.4
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 4.0e-08 63.2 280 27.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 5.2e-08 62.8 84 41.7
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 7.5e-07 58.9 138 34.1
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.8e-07 58.5 153 33.3
ATR0174G047 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.3e-06 58.2 207 30.4
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 3.7e-06 56.6 65 46.2


User provided reference genes

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