Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 7.7e-225 783.5 393 100.0
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 7.9e-222 773.5 393 99.2
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.0e-216 756.5 393 97.2
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 5.0e-192 674.5 399 86.2
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.1e-190 669.1 392 86.7
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 8.9e-173 610.5 395 78.0
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 8.3e-171 604.0 389 79.4
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 3.2e-170 602.1 394 75.9
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 3.2e-170 602.1 394 75.9
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.2e-169 600.1 395 77.5
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 3.5e-169 598.6 391 76.7
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.3e-168 596.7 395 75.4
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.7e-168 596.3 395 76.7
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 2.3e-168 595.9 391 77.2
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 3.9e-168 595.1 393 75.6
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.9e-167 592.8 391 75.7
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 4.3e-167 591.7 395 75.4
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 4.3e-167 591.7 395 75.4
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 5.6e-167 591.3 395 75.2
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 7.3e-167 590.9 393 74.8
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 9.5e-167 590.5 393 77.1
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 3.6e-166 588.6 395 75.7
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 3.6e-166 588.6 393 74.8
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 4.7e-166 588.2 392 75.5
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 6.2e-166 587.8 395 74.9
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.1e-165 587.0 392 75.3
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 4.0e-165 585.1 392 75.0
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 4.0e-165 585.1 392 75.0
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 2.0e-164 582.8 393 73.3
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 2.6e-164 582.4 395 75.7
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 3.4e-164 582.0 394 75.9
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 1.7e-163 579.7 393 74.6
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 4.9e-163 578.2 392 75.3
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.1e-162 577.0 388 75.8
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.4e-162 576.6 385 74.8
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.9e-162 576.2 411 71.3
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 3.2e-162 575.5 389 75.1
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 4.1e-162 575.1 392 74.7
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.6e-161 573.2 395 74.2
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 2.7e-161 572.4 393 71.5
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.5e-159 566.6 390 72.3
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.9e-159 566.2 388 72.7
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 2.5e-159 565.8 392 73.2
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.3e-159 565.5 394 72.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 7.3e-159 564.3 393 73.0
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.6e-158 563.1 395 71.4
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 3.6e-158 562.0 398 73.1
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 4.7e-158 561.6 398 70.9
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 6.2e-158 561.2 394 71.6
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 6.2e-158 561.2 393 71.5
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 1.4e-157 560.1 527 59.4
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.4e-157 560.1 395 70.9
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.4e-157 560.1 395 70.4
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 3.1e-157 558.9 396 72.5
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 5.2e-157 558.1 393 71.2
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 5.2e-157 558.1 391 73.1
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.2e-156 557.0 397 70.8
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.0e-156 556.2 388 71.6
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.0e-156 556.2 388 71.6
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 3.4e-156 555.4 388 71.4
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 7.6e-156 554.3 393 71.8
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.2e-155 552.7 393 71.5
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 4.9e-155 551.6 391 71.4
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 8.4e-155 550.8 390 72.6
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.9e-154 549.7 394 70.8
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.9e-154 549.7 395 69.1
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 7.1e-154 547.7 393 70.2
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 7.1e-154 547.7 393 70.2
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 9.2e-154 547.4 393 70.0
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 9.2e-154 547.4 391 69.6
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.0e-152 543.9 317 89.3
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.3e-152 543.5 392 69.6
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.3e-152 542.7 393 70.5
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 3.0e-152 542.3 398 68.8
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 1.9e-151 539.7 392 68.4
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 4.3e-151 538.5 394 70.8
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 3.6e-150 535.4 393 70.7
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.6e-150 535.4 385 69.6
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.7e-150 535.0 385 69.4
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.2e-149 531.6 391 70.8
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.2e-147 526.2 394 67.0
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 6.4e-147 524.6 393 67.9
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 2.4e-146 522.7 427 65.3
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.2e-145 520.4 364 72.5
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.6e-145 520.0 393 65.1
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.7e-144 516.5 389 67.4
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 2.3e-144 516.2 390 67.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.3e-142 510.4 392 65.8
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 1.4e-141 506.9 392 68.1
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.8e-141 506.5 392 66.3
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.3e-141 505.0 394 65.0
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 1.2e-140 503.8 384 66.9
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 2.6e-140 502.7 387 65.6
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 9.9e-140 500.7 356 71.9
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 3.2e-138 495.7 395 65.8
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 4.6e-137 491.9 318 77.7
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.5e-135 486.1 359 70.2
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.6e-126 456.8 385 64.4
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.8e-123 445.7 319 73.4
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.2e-121 440.7 298 73.8
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.1e-118 429.9 298 72.1
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 3.4e-116 422.5 340 65.9
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.8e-115 419.1 314 68.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 8.7e-112 407.9 382 53.4
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.9e-111 406.8 263 74.1
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 7.4e-111 404.8 389 54.0
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 7.9e-105 384.8 389 52.7
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.3e-104 383.3 388 51.3
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 8.8e-104 381.3 412 49.5
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 2.6e-103 379.8 267 69.3
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.8e-102 376.3 233 76.0
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-98 364.4 230 77.0
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 1.2e-89 334.3 279 64.2
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-85 321.2 242 71.9
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 7.8e-68 261.9 246 60.2
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.8e-61 240.7 148 75.0
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.6e-57 227.6 439 36.2
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 4.7e-57 226.1 161 75.2
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.4e-53 213.8 401 35.4
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 7.8e-52 208.8 432 35.0
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 5.8e-47 192.6 160 63.1
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 2.7e-44 183.7 117 82.1
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.4e-39 166.4 107 69.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 4.6e-28 129.8 191 39.8
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.4e-21 107.5 66 72.7
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 4.6e-20 103.2 143 38.5
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 3.0e-19 100.5 153 43.1
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.9e-18 97.8 152 38.2
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 3.3e-18 97.1 104 57.7
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 2.8e-17 94.0 65 72.3
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 2.4e-13 80.9 110 38.2
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-12 77.8 70 51.4
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 6.0e-12 76.3 36 100.0
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 8.7e-11 72.4 70 51.4
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.9e-10 71.2 53 69.8
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.0e-08 63.5 85 35.3


User provided reference genes

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