Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.6e-194 682.6 349 100.0
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.1e-189 665.6 349 97.7
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-189 665.2 349 97.7
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.5e-179 632.1 349 92.6
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.3e-178 629.8 349 92.6
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 9.0e-177 623.6 349 90.3
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.4e-174 616.3 349 90.8
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.8e-172 609.4 349 89.1
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.6e-157 558.1 349 83.4
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.7e-151 539.7 348 78.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 2.1e-149 532.7 349 77.1
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 6.7e-148 527.7 349 77.1
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.5e-147 526.6 353 76.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.0e-147 526.2 349 75.6
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.6e-147 525.8 349 76.2
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.3e-146 523.5 349 75.4
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.3e-146 523.5 349 73.6
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.8e-146 521.5 349 75.1
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 6.3e-146 521.2 349 75.1
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.2e-144 516.9 349 75.4
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.0e-144 516.2 349 74.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.6e-144 515.8 349 74.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 3.5e-144 515.4 349 74.5
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.9e-144 514.6 337 76.0
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.7e-143 513.1 349 73.4
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 6.5e-143 511.1 349 73.9
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 6.5e-143 511.1 349 73.4
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 4.2e-142 508.4 349 73.9
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 4.2e-142 508.4 349 73.4
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 9.4e-142 507.3 349 74.8
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 9.4e-142 507.3 349 73.6
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.2e-141 506.9 349 73.4
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.0e-140 503.8 349 73.9
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.0e-140 503.8 354 73.4
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.4e-140 503.4 349 73.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.8e-140 503.1 349 72.2
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.0e-140 502.3 353 71.4
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.0e-140 501.9 356 73.3
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.2e-140 501.5 356 73.6
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 5.2e-140 501.5 350 72.3
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 5.2e-140 501.5 350 72.9
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.7e-140 501.1 356 73.3
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.6e-139 499.2 378 69.0
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.3e-139 498.8 349 71.1
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.5e-139 497.7 353 73.9
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.7e-138 496.5 349 72.5
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 2.2e-138 496.1 349 72.2
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.1e-137 493.8 349 72.2
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 9.1e-137 490.7 368 70.1
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.6e-136 490.0 349 71.9
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 3.5e-136 488.8 349 71.1
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.0e-135 487.3 348 70.1
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.3e-135 486.9 348 69.5
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.3e-135 486.9 348 69.3
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.3e-135 486.9 348 69.3
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.3e-135 486.9 349 72.5
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.7e-135 486.5 348 69.0
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.7e-135 486.5 354 68.6
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 3.8e-135 485.3 348 68.7
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-134 483.4 348 68.4
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.5e-134 483.4 348 69.0
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.5e-134 483.4 348 69.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.5e-134 483.4 349 69.3
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.9e-134 483.0 348 69.5
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 2.5e-134 482.6 348 69.3
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 3.2e-134 482.3 349 68.2
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 7.2e-134 481.1 349 69.9
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 9.4e-134 480.7 349 68.2
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 9.4e-134 480.7 349 68.5
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 9.4e-134 480.7 349 68.5
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.2e-133 480.3 348 68.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.2e-133 480.3 348 68.1
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.7e-133 479.2 349 69.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 2.7e-133 479.2 357 68.1
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.6e-133 478.8 349 67.9
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.6e-133 478.8 349 69.3
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 4.7e-133 478.4 349 67.9
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 4.7e-133 478.4 349 69.6
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 4.7e-133 478.4 349 69.6
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.0e-132 475.7 354 69.5
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 2.6e-131 472.6 325 71.4
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 7.5e-131 471.1 348 68.1
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.7e-130 469.9 344 69.8
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 8.3e-130 467.6 311 74.3
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 2.4e-129 466.1 362 65.5
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 9.1e-129 464.2 323 74.0
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.6e-128 463.4 354 67.8
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 4.5e-128 461.8 338 69.5
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.9e-128 461.5 354 66.9
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 3.8e-127 458.8 349 68.8
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 2.1e-125 453.0 349 68.5
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 4.7e-125 451.8 311 73.0
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 8.8e-124 447.6 349 66.5
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 1.2e-123 447.2 403 60.0
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 5.7e-123 444.9 349 65.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 5.7e-123 444.9 362 64.6
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 9.8e-123 444.1 286 75.5
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.3e-122 443.7 368 64.9
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.8e-121 439.9 329 69.6
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.8e-121 439.9 362 63.3
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 3.8e-119 432.2 430 57.9
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 6.8e-116 421.4 365 61.4
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 5.9e-112 408.3 356 59.8
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.0e-111 407.5 289 69.9
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.3e-110 402.1 240 85.4
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 4.3e-110 402.1 356 59.0
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 4.0e-108 395.6 242 81.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 4.0e-108 395.6 242 81.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 3.4e-107 392.5 349 60.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 5.8e-107 391.7 310 63.9
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 2.0e-104 383.3 293 64.8
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.3e-100 369.8 233 78.1
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 9.2e-97 357.8 268 66.8
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 2.7e-96 356.3 349 59.3
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 4.6e-96 355.5 217 82.5
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.2e-91 340.9 192 88.5
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 3.4e-91 339.3 260 63.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-89 334.0 279 61.6
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.3e-87 327.4 225 74.7
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 6.9e-76 288.5 159 85.5
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.8e-71 273.9 243 56.8
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 2.6e-67 260.0 328 44.5
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 6.4e-66 255.4 352 42.3
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.3e-63 246.9 143 88.8
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.3e-62 242.7 143 86.7
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 5.6e-62 242.3 198 61.1
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 4.8e-61 239.2 143 81.1
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.0e-58 231.5 239 56.9
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 4.2e-57 226.1 129 86.8
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.0e-55 221.5 165 66.1
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-54 218.0 128 86.7
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 4.3e-54 216.1 162 67.9
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.0e-50 204.9 192 61.5
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-43 180.6 225 43.6
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.3e-42 177.9 193 51.8
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 4.1e-36 156.4 114 65.8
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.9e-34 150.2 87 86.2
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-33 147.5 92 80.4
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 9.7e-30 135.2 214 36.0
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.2e-22 111.7 116 45.7
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.2e-22 111.7 253 32.8
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.4e-20 104.0 158 42.4
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 2.7e-19 100.5 132 44.7
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 5.9e-19 99.4 254 29.1
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.5e-18 95.9 52 90.4
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.1e-17 95.1 257 29.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 3.0e-15 87.0 45 88.9
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.0e-07 62.0 199 27.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 8.9e-07 58.9 32 93.8
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 3.4e-06 57.0 313 26.2


User provided reference genes

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