Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.0e-132 475.7 232 100.0
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 3.1e-125 451.8 225 98.2
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 5.9e-124 447.6 224 97.8
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 2.5e-98 362.5 220 84.1
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 3.6e-97 358.6 222 82.9
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 4.4e-87 325.1 224 73.2
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 3.9e-83 312.0 220 73.2
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 5.0e-83 311.6 222 71.2
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 3.3e-82 308.9 222 70.3
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 8.0e-81 304.3 217 72.4
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 4.0e-80 302.0 217 71.4
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 2.0e-79 299.7 193 79.8
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 1.3e-78 297.0 203 71.9
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.7e-78 296.6 218 69.7
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 6.4e-78 294.7 148 97.3
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.1e-77 293.9 203 73.9
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.9e-77 293.1 220 70.0
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 3.2e-77 292.4 217 71.0
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 7.0e-77 291.2 210 71.9
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.5e-76 288.9 196 72.4
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.5e-76 288.9 196 72.4
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 4.6e-76 288.5 208 71.6
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 7.8e-76 287.7 217 66.8
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.0e-75 287.3 216 65.7
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 1.3e-75 287.0 220 67.7
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 3.0e-75 285.8 208 69.7
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 3.0e-75 285.8 180 75.6
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 3.9e-75 285.4 217 67.7
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 5.0e-75 285.0 237 64.1
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 5.0e-75 285.0 225 68.4
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 8.6e-75 284.3 210 70.0
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 2.5e-74 282.7 220 66.8
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 4.3e-74 282.0 189 73.5
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.6e-73 280.0 218 66.1
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 4.7e-73 278.5 220 66.8
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 4.7e-73 278.5 219 65.3
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 4.7e-73 278.5 216 63.9
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 6.2e-73 278.1 227 64.8
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 6.2e-73 278.1 216 65.3
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 8.1e-73 277.7 209 67.5
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 8.1e-73 277.7 217 66.8
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 8.1e-73 277.7 225 64.9
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.1e-72 277.3 223 64.1
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.4e-72 276.9 221 63.3
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 3.1e-72 275.8 217 63.6
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 4.0e-72 275.4 219 65.8
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 8.9e-72 274.2 221 65.2
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 1.2e-71 273.9 222 60.8
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.2e-71 273.9 220 63.6
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 2.0e-71 273.1 210 66.7
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 5.8e-71 271.6 225 63.6
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 7.5e-71 271.2 221 63.8
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.3e-70 270.4 206 64.6
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.7e-70 270.0 223 64.1
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 1.7e-70 270.0 171 73.1
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 2.9e-70 269.2 226 62.8
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 2.9e-70 269.2 223 62.3
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 3.7e-70 268.9 216 66.7
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 3.7e-70 268.9 211 65.9
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.4e-69 266.9 220 62.7
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 1.9e-69 266.5 207 63.8
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 2.4e-69 266.2 218 64.2
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 7.1e-69 264.6 190 68.9
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 7.1e-69 264.6 161 78.3
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 1.2e-68 263.8 214 61.7
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 2.1e-68 263.1 206 62.1
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.1e-68 263.1 168 76.2
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 3.5e-68 262.3 219 62.6
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 6.0e-68 261.5 214 60.7
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 7.8e-68 261.2 220 64.1
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.7e-67 260.0 163 74.8
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 3.0e-67 259.2 216 63.4
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 6.6e-67 258.1 218 61.9
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.5e-66 256.9 218 60.6
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.9e-66 256.5 218 60.6
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 4.3e-66 255.4 218 60.6
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 5.6e-66 255.0 218 60.6
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 5.6e-66 255.0 218 60.6
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 5.6e-66 255.0 218 60.6
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 7.3e-66 254.6 224 62.5
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 9.5e-66 254.2 218 60.1
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.2e-65 253.8 208 66.3
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.2e-65 253.8 205 64.4
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.6e-65 252.3 231 58.4
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 4.0e-64 248.8 221 59.3
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.2e-63 247.3 230 60.0
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.5e-63 246.9 204 65.2
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 7.6e-63 244.6 168 67.9
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 7.6e-63 244.6 219 59.4
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.3e-62 243.8 234 57.7
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 2.9e-62 242.7 234 56.4
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 8.4e-62 241.1 229 56.8
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 2.4e-61 239.6 125 89.6
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 5.4e-61 238.4 149 71.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 9.2e-61 237.7 222 58.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 9.2e-61 237.7 177 66.7
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 7.8e-60 234.6 151 73.5
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 6.6e-59 231.5 197 59.9
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 5.6e-58 228.4 184 64.7
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 7.3e-58 228.0 169 65.1
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 6.2e-57 224.9 133 75.9
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 2.4e-56 223.0 138 71.0
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.3e-54 217.2 211 57.8
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 4.9e-54 215.3 135 78.5
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 2.3e-51 206.5 177 58.8
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 1.8e-48 196.8 157 55.4
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 7.6e-47 191.4 125 72.8
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 7.9e-44 181.4 111 71.2
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 1.8e-43 180.3 222 50.0
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.3e-41 174.1 160 62.5
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.3e-41 174.1 160 62.5
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 3.0e-35 152.9 141 59.6
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.1e-34 151.0 93 77.4
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.1e-34 151.0 84 84.5
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 7.4e-34 148.3 155 46.5
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 2.1e-33 146.7 143 60.1
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 2.8e-33 146.4 82 84.1
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.5e-31 140.6 128 47.7
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 4.5e-31 139.0 122 50.8
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 2.1e-28 130.2 143 54.5
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.9e-26 123.6 118 58.5
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 3.7e-17 92.8 114 35.1
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 2.8e-09 66.6 38 71.1
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 7.0e-08 62.0 134 29.9
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.0e-07 60.5 36 75.0


User provided reference genes

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