Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.2e-87 326.6 181 100.0
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.0e-82 309.3 181 93.4
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.8e-81 304.7 181 93.4
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 2.1e-68 262.7 181 75.7
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 1.4e-67 260.0 181 79.6
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 4.4e-66 255.0 178 79.8
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.1e-64 250.4 178 70.2
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 2.4e-64 249.2 181 77.9
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 8.5e-62 240.7 182 71.4
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 8.5e-62 240.7 182 71.4
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.5e-61 238.0 182 72.0
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 2.2e-49 199.5 174 56.9
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 3.7e-49 198.7 179 64.8
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 6.3e-49 198.0 177 56.5
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 1.1e-48 197.2 181 55.8
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 3.1e-48 195.7 182 56.0
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 5.4e-48 194.9 174 55.7
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.2e-47 193.7 169 56.8
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 1.7e-46 189.9 182 53.8
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 1.7e-46 189.9 169 57.4
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 2.9e-46 189.1 178 53.9
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 3.8e-46 188.7 181 49.7
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 8.6e-46 187.6 181 50.3
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 4.2e-45 185.3 181 61.3
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 4.2e-45 185.3 173 53.8
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 5.5e-45 184.9 173 53.8
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 5.5e-45 184.9 181 51.4
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 5.5e-45 184.9 181 60.2
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 9.5e-45 184.1 181 60.2
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.2e-44 183.7 180 51.7
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.2e-44 183.7 181 51.9
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 1.6e-44 183.3 182 51.6
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 2.1e-44 183.0 179 60.3
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.8e-44 182.6 181 50.3
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 6.1e-44 181.4 177 53.1
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 6.1e-44 181.4 182 53.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.0e-43 179.1 190 49.5
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 3.0e-43 179.1 171 52.0
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 4.0e-43 178.7 182 50.5
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 5.2e-43 178.3 182 58.2
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 6.8e-43 177.9 169 52.1
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 1.2e-42 177.2 177 49.7
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.5e-42 176.8 178 52.2
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 7.5e-42 174.5 172 50.6
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 9.8e-42 174.1 181 59.1
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 9.8e-42 174.1 173 53.2
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.3e-41 173.7 181 53.6
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.3e-41 173.7 177 49.7
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.3e-41 173.7 180 48.3
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 2.2e-41 172.9 177 49.7
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.8e-41 172.6 182 48.9
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 2.8e-41 172.6 177 49.2
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 8.3e-41 171.0 175 50.3
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 3.1e-40 169.1 182 48.4
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.1e-40 169.1 182 48.4
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.4e-40 168.3 182 47.3
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 7.0e-40 167.9 170 51.8
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 2.0e-39 166.4 177 52.0
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 2.7e-39 166.0 172 56.4
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 7.8e-39 164.5 177 51.4
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 1.0e-38 164.1 175 48.0
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.3e-38 163.7 181 48.6
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.3e-38 162.9 182 47.3
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 2.3e-38 162.9 175 46.3
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 5.0e-38 161.8 175 47.4
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.1e-37 160.6 178 47.2
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.9e-37 159.8 174 46.6
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 1.9e-37 159.8 176 47.2
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 4.3e-37 158.7 183 50.8
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 5.6e-37 158.3 175 45.7
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 9.5e-37 157.5 178 49.4
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 6.1e-36 154.8 119 61.3
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 6.1e-36 154.8 175 44.6
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 6.1e-36 154.8 175 45.1
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 6.1e-36 154.8 172 45.9
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.0e-35 154.1 170 52.4
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.8e-35 153.3 176 50.0
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 4.0e-35 152.1 171 46.8
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 8.9e-35 151.0 177 49.2
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 8.9e-35 151.0 172 46.5
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 3.4e-34 149.1 174 43.7
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 5.8e-34 148.3 174 44.3
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.3e-33 147.1 176 43.2
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 2.2e-33 146.4 181 48.1
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.2e-33 146.4 169 43.8
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.1e-32 144.1 175 47.4
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.9e-32 143.3 170 44.1
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 7.0e-32 141.4 177 44.6
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.2e-31 140.6 172 47.1
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.2e-31 140.6 170 43.5
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.6e-31 140.2 179 54.7
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 3.5e-31 139.0 179 54.7
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 6.0e-31 138.3 117 56.4
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 7.8e-31 137.9 181 46.4
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 7.8e-31 137.9 181 45.3
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 1.7e-30 136.7 177 44.6
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.7e-30 136.7 172 43.6
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.7e-30 136.7 174 42.0
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 2.3e-30 136.3 177 44.6
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 2.3e-30 136.3 177 44.6
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 2.3e-30 136.3 174 46.6
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 3.9e-30 135.6 171 45.0
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 5.0e-30 135.2 174 42.0
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 8.6e-30 134.4 177 43.5
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 8.6e-30 134.4 169 45.0
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.1e-29 134.0 176 41.5
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 1.5e-29 133.7 185 43.2
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.9e-29 133.3 184 41.8
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 2.5e-29 132.9 177 42.9
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 7.3e-29 131.3 174 41.4
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.2e-28 130.6 172 43.6
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 2.8e-28 129.4 177 41.8
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 2.8e-28 129.4 174 39.7
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 4.7e-28 128.6 174 40.2
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 6.2e-28 128.3 172 45.3
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.1e-27 127.5 178 43.3
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 6.8e-27 124.8 177 42.4
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 6.8e-27 124.8 181 42.0
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 6.8e-27 124.8 181 42.0
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 6.8e-27 124.8 180 41.1
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.2e-26 124.0 176 39.2
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 1.5e-26 123.6 175 40.6
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 4.4e-26 122.1 181 42.5
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 4.4e-26 122.1 181 42.5
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 5.8e-26 121.7 110 55.5
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 2.9e-25 119.4 173 42.8
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 3.2e-24 115.9 176 42.6
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.5e-18 97.1 102 47.1
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 1.1e-16 90.9 109 45.0
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.5e-13 80.5 184 29.3
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.2e-10 70.9 88 38.6
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 2.2e-09 66.6 88 34.1
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 1.6e-07 60.5 112 32.1


User provided reference genes

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