Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.4e-229 799.3 401 100.0
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.1e-222 775.4 402 95.5
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.9e-219 764.2 402 96.0
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.2e-193 679.9 408 83.1
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.3e-190 669.8 408 83.8
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 3.4e-188 661.8 402 81.6
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.3e-182 643.3 402 79.6
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.6e-180 635.6 427 75.6
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.1e-177 625.9 409 78.5
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-175 620.2 408 78.4
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.7e-174 615.1 408 77.7
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 2.5e-170 602.4 401 75.6
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 6.1e-169 597.8 401 74.6
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.4e-168 596.7 400 74.2
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.1e-167 593.6 402 74.4
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 5.7e-167 591.3 396 75.0
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 5.3e-165 584.7 345 83.5
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 2.2e-163 579.3 407 71.7
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 2.2e-163 579.3 410 72.0
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 7.2e-162 574.3 408 70.8
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 9.4e-162 573.9 393 76.3
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 2.1e-161 572.8 382 75.4
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 1.4e-160 570.1 412 70.1
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.8e-160 569.7 408 72.1
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 5.2e-160 568.2 408 71.3
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.1e-159 567.0 408 71.6
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 5.7e-159 564.7 404 72.3
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 7.5e-159 564.3 403 72.5
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 9.7e-159 563.9 394 74.4
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.7e-158 563.1 408 70.6
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 2.8e-158 562.4 408 70.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 3.7e-158 562.0 400 72.2
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.1e-157 560.5 421 69.4
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 2.7e-156 555.8 413 70.7
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 3.5e-156 555.4 395 72.4
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.5e-156 555.4 412 70.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.0e-155 553.9 393 69.5
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.7e-155 553.1 352 76.7
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.7e-155 553.1 406 70.4
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 3.8e-155 552.0 414 70.3
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.8e-155 552.0 400 71.2
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 5.0e-155 551.6 395 69.9
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.9e-154 549.7 354 77.4
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 7.2e-154 547.7 399 68.9
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 3.6e-153 545.4 408 71.3
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 3.6e-153 545.4 398 68.6
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.6e-153 545.4 398 69.1
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 6.1e-153 544.7 407 69.8
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.0e-152 543.9 344 77.6
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.8e-152 543.1 319 83.4
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.3e-152 542.7 379 73.9
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 8.8e-152 540.8 399 70.9
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 5.7e-151 538.1 352 76.7
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 7.5e-151 537.7 362 72.4
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.3e-150 537.0 349 78.2
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.3e-150 537.0 412 69.9
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.8e-150 535.8 410 68.0
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.7e-150 535.4 407 70.3
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 5.4e-149 531.6 412 69.7
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.0e-149 531.2 412 69.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.9e-148 528.1 331 79.2
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 1.0e-147 527.3 346 75.7
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 2.2e-147 526.2 371 70.6
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.2e-147 526.2 282 87.9
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 2.2e-147 526.2 296 82.8
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 3.8e-147 525.4 444 62.2
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 8.5e-147 524.2 307 81.4
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.5e-146 522.7 414 66.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 3.2e-146 522.3 395 70.6
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.0e-144 517.3 349 71.3
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 6.8e-144 514.6 430 63.0
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 8.8e-144 514.2 489 59.7
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 8.8e-144 514.2 310 78.7
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.0e-143 513.1 411 65.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 2.6e-143 512.7 296 82.1
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 3.4e-143 512.3 327 76.5
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 7.5e-143 511.1 332 75.9
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.8e-142 509.2 299 79.9
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 3.7e-142 508.8 299 79.6
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 3.7e-142 508.8 289 83.7
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 4.9e-142 508.4 306 79.1
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 6.3e-142 508.1 292 81.5
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.1e-141 507.3 321 76.9
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.1e-141 505.8 349 72.8
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 5.4e-141 505.0 334 73.1
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 9.2e-141 504.2 403 64.3
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 9.2e-141 504.2 442 61.1
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.7e-140 502.7 371 69.8
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.0e-139 500.7 332 75.6
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 5.0e-139 498.4 414 64.7
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 5.0e-139 498.4 351 72.6
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 6.6e-139 498.0 303 76.9
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.9e-138 496.5 398 65.1
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 2.5e-138 496.1 333 75.4
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 2.5e-138 496.1 333 75.4
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 3.3e-138 495.7 332 75.3
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 4.3e-138 495.4 330 74.5
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 7.3e-138 494.6 332 74.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 7.3e-138 494.6 410 64.1
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 2.1e-137 493.0 421 63.7
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 8.0e-137 491.1 408 65.9
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 5.2e-136 488.4 380 64.7
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.6e-135 486.1 302 74.8
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.3e-134 481.1 402 65.4
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 4.1e-133 478.8 393 61.6
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.7e-132 476.1 266 82.7
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 3.0e-131 472.6 301 74.1
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.9e-130 469.9 326 69.6
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 9.5e-130 467.6 345 68.4
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 6.2e-129 464.9 265 82.3
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 3.7e-126 455.7 266 81.6
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 4.1e-125 452.2 312 68.9
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 2.8e-121 439.5 281 75.1
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.0e-120 435.6 300 68.0
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 6.6e-115 418.3 450 53.3
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.4e-112 410.6 296 65.2
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 5.8e-111 405.2 274 67.5
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 3.8e-110 402.5 348 65.2
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 8.4e-110 401.4 219 87.7
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.1e-109 401.0 272 68.0
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.3e-107 394.0 364 56.9
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 6.4e-102 375.2 401 53.6
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.1e-96 356.3 183 90.7
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.3e-89 334.3 396 50.0
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.1e-73 280.4 147 85.0
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.2e-71 274.6 147 85.7
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.0e-70 269.2 266 58.6
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.7e-46 191.0 174 62.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 8.5e-46 188.7 173 59.0
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 6.3e-41 172.6 185 49.7
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-39 167.9 120 72.5
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.9e-38 163.7 94 73.4
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 4.4e-34 149.8 165 50.3
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 7.5e-34 149.1 127 60.6
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 2.5e-29 134.0 66 89.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 2.5e-29 134.0 137 54.7
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.0e-28 129.0 84 73.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.4e-27 128.3 66 83.3
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 4.1e-24 116.7 72 79.2
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.8e-22 110.2 66 77.3
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.9e-19 99.0 71 69.0
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 7.0e-16 89.4 66 68.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 7.0e-16 89.4 66 62.1
MD06G1074700 Malus domestica HOM05D005292 ORTHO05D248125 3.2e-08 63.9 83 48.2
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 1.6e-07 61.6 48 56.2
MELO3C028711.2 Cucumis melo HOM05D000229 ORTHO05D005404 2.3e-06 57.8 42 59.5


User provided reference genes

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