Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.5e-58 229.2 107 100.0
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.4e-58 227.6 107 99.1
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.9e-57 224.9 107 98.1
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 2.9e-57 224.9 107 98.1
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.6e-55 219.2 107 94.4
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.0e-55 218.8 107 96.3
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 7.8e-55 216.9 107 95.3
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.2e-52 209.5 111 90.1
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.5e-50 202.6 103 90.3
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 4.9e-49 197.6 104 84.6
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.5e-45 186.0 101 82.2
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 2.1e-44 182.2 102 82.4
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 1.7e-38 162.5 100 74.0
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 6.6e-38 160.6 103 70.9
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 8.6e-38 160.2 104 70.2
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 1.1e-37 159.8 103 69.9
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.6e-36 156.0 103 67.0
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 1.6e-36 156.0 108 67.6
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 2.8e-36 155.2 105 67.6
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 6.2e-36 154.1 106 67.0
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 6.2e-36 154.1 105 68.6
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 6.2e-36 154.1 106 67.0
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 1.1e-35 153.3 97 70.1
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 1.1e-35 153.3 102 67.6
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.1e-35 153.3 101 69.3
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 2.4e-35 152.1 98 71.4
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 5.2e-35 151.0 103 67.0
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 5.2e-35 151.0 106 66.0
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 6.9e-35 150.6 106 65.1
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 9.0e-35 150.2 106 66.0
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.2e-34 149.8 102 68.6
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 1.2e-34 149.8 100 68.0
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 2.0e-34 149.1 100 68.0
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 2.6e-34 148.7 104 64.4
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 2.6e-34 148.7 107 64.5
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 4.4e-34 147.9 105 62.9
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 4.4e-34 147.9 101 64.4
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 7.6e-34 147.1 105 64.8
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 9.9e-34 146.7 101 63.4
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 2.2e-33 145.6 105 63.8
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 2.2e-33 145.6 103 64.1
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 2.9e-33 145.2 100 66.0
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 2.9e-33 145.2 100 66.0
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 4.9e-33 144.4 108 63.0
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 4.9e-33 144.4 100 66.0
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 6.4e-33 144.1 104 61.5
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 8.4e-33 143.7 77 79.2
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 8.4e-33 143.7 105 61.0
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 1.1e-32 143.3 104 66.3
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 1.9e-32 142.5 104 64.4
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 7.1e-32 140.6 101 64.4
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 9.3e-32 140.2 103 64.1
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.2e-31 139.8 104 62.5
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 1.6e-31 139.4 100 61.0
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 2.1e-31 139.0 99 62.6
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 2.1e-31 139.0 122 56.6
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 2.1e-31 139.0 104 62.5
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 2.7e-31 138.7 101 65.3
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 3.5e-31 138.3 100 63.0
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 3.5e-31 138.3 101 64.4
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 3.5e-31 138.3 101 64.4
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 6.0e-31 137.5 102 60.8
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 1.0e-30 136.7 89 68.5
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.3e-30 136.3 100 60.0
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.3e-30 136.3 100 60.0
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.7e-30 136.0 91 63.7
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 2.3e-30 135.6 105 61.9
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 2.3e-30 135.6 107 60.7
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 3.0e-30 135.2 107 60.7
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 1.5e-29 132.9 107 57.9
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.5e-29 132.9 101 63.4
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 3.3e-29 131.7 104 59.6
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.3e-29 131.7 91 62.6
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 4.3e-29 131.3 102 59.8
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 5.6e-29 131.0 108 58.3
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 7.3e-29 130.6 108 59.3
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 1.3e-28 129.8 104 58.7
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 1.3e-28 129.8 104 59.6
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 2.1e-28 129.0 98 62.2
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 2.8e-28 128.6 90 60.0
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 8.1e-28 127.1 99 58.6
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 1.1e-27 126.7 98 57.1
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 1.4e-27 126.3 97 56.7
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 1.8e-27 125.9 104 58.7
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 3.1e-27 125.2 98 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 4.0e-27 124.8 101 51.5
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 1.2e-26 123.2 98 56.1
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 1.2e-26 123.2 103 58.3
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 2.0e-26 122.5 90 54.4
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 5.8e-26 120.9 173 39.9
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 1.3e-25 119.8 93 55.9
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.7e-25 119.4 109 55.0
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 2.9e-25 118.6 127 48.8
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 4.9e-25 117.9 126 48.4
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 6.4e-25 117.5 116 50.0
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 8.4e-25 117.1 77 67.5
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 1.9e-24 115.9 121 49.6
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 1.9e-24 115.9 121 49.6
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 3.2e-24 115.2 143 44.8
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 4.2e-24 114.8 115 47.8
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 4.2e-24 114.8 78 64.1
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 7.1e-24 114.0 100 58.0
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.6e-23 112.8 77 67.5
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.1e-23 112.5 74 66.2
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.1e-23 112.5 73 67.1
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 7.9e-23 110.5 74 67.6
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 1.3e-22 109.8 124 47.6
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.3e-22 109.8 74 67.6
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 1.8e-22 109.4 74 64.9
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 1.5e-21 106.3 71 67.6
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 7.4e-21 104.0 74 64.9
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 2.1e-20 102.4 68 66.2
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 3.7e-20 101.7 69 66.7
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 6.2e-20 100.9 64 68.8
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.4e-19 99.8 70 65.7
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 5.3e-19 97.8 74 60.8
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 4.5e-18 94.7 72 55.6
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 1.3e-17 93.2 72 59.7
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 3.8e-17 91.7 67 64.2
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 1.4e-16 89.7 76 55.3
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 1.9e-16 89.4 50 80.0
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 2.1e-15 85.9 87 44.8
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 1.0e-14 83.6 121 38.8
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 2.4e-11 72.4 99 37.4
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 1.3e-09 66.6 40 70.0
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 2.9e-09 65.5 40 70.0
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 5.1e-06 54.7 39 61.5


User provided reference genes

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