Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 4.4e-46 187.6 93 100.0
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.0e-43 178.7 92 95.7
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 2.7e-43 178.3 92 95.7
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.2e-23 110.9 91 69.2
Gohir.D03G083500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 7.1e-20 100.5 89 64.0
Gorai.003G079100 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.5e-19 98.2 90 62.2
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 3.9e-18 94.7 92 65.2
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 5.6e-17 90.9 108 55.6
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 7.3e-17 90.5 102 58.8
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 2.8e-16 88.6 99 58.6
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 4.7e-16 87.8 108 57.4
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 3.1e-15 85.1 74 63.5
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.8e-14 80.9 100 53.0
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.8e-14 80.9 100 53.0
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 9.9e-14 80.1 100 53.0
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-12 75.9 102 49.0
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 3.9e-10 68.2 109 45.9
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 6.6e-10 67.4 113 43.4
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 3.3e-09 65.1 104 43.3
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 5.6e-09 64.3 107 43.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 9.6e-09 63.5 100 42.0
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.6e-08 62.8 94 48.9
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 2.1e-08 62.4 100 45.0
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 3.6e-08 61.6 93 47.3
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 3.6e-08 61.6 90 47.8
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 4.8e-08 61.2 98 46.9
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 4.8e-08 61.2 88 43.2
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 6.2e-08 60.8 107 44.9
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 6.2e-08 60.8 108 40.7
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.2e-08 60.8 94 47.9
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 8.1e-08 60.5 101 45.5
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.1e-08 60.5 97 45.4
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 1.4e-07 59.7 102 40.2
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 1.8e-07 59.3 104 34.6
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.0e-07 58.2 61 54.1
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 4.0e-07 58.2 100 40.0
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 6.9e-07 57.4 58 56.9
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 9.0e-07 57.0 70 50.0
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 9.0e-07 57.0 102 39.2
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 9.0e-07 57.0 105 41.0
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 1.5e-06 56.2 102 35.3
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.5e-06 56.2 57 59.6
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 2.0e-06 55.8 105 40.0
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.6e-06 55.5 97 40.2
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.6e-06 55.5 102 39.2
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.6e-06 55.5 93 41.9
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 3.4e-06 55.1 100 42.0
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 3.4e-06 55.1 93 43.0
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 3.4e-06 55.1 93 40.9
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.4e-06 54.7 94 40.4
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 4.4e-06 54.7 102 39.2
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 5.8e-06 54.3 104 41.3
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 5.8e-06 54.3 61 52.5
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 5.8e-06 54.3 103 36.9
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 7.6e-06 53.9 104 36.5
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 7.6e-06 53.9 104 36.5
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 7.6e-06 53.9 89 40.4
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 7.6e-06 53.9 89 40.4
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 7.6e-06 53.9 94 41.5
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 7.6e-06 53.9 94 41.5
THA.LOC104815061 Tarenaya hassleriana HOM05D008938 ORTHO05D011105 7.6e-06 53.9 97 40.2
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 9.9e-06 53.5 102 35.3
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 9.9e-06 53.5 102 35.3


User provided reference genes

Program Settings