Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-56 221.1 118 100.0
Gohir.A06G072800 Gossypium hirsutum HOM05D005353 ORTHO05D006248 8.4e-26 120.6 74 86.5
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-18 95.9 58 93.1
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.4e-18 94.4 60 90.0
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.4e-18 94.0 72 76.4
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-17 93.6 58 91.4
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.4e-17 91.3 60 86.7
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-16 88.6 60 85.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 4.6e-16 88.2 70 68.6
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.9e-14 82.8 68 70.6
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-13 79.3 58 75.9
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.1e-13 79.3 58 75.9
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.1e-13 79.3 58 75.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.2e-13 77.8 58 74.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 8.1e-13 77.4 58 75.9
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-12 77.0 58 74.1
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.1e-12 75.5 66 66.7
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 3.1e-12 75.5 58 74.1
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 4.0e-12 75.1 66 66.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 4.0e-12 75.1 67 65.7
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 6.9e-12 74.3 66 66.7
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.2e-11 73.6 66 65.2
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.5e-11 73.2 58 72.4
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.6e-11 72.4 66 65.2
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 4.5e-11 71.6 70 64.3
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.8e-11 71.2 58 67.2
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 5.8e-11 71.2 58 67.2
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 9.9e-11 70.5 70 64.3
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 9.9e-11 70.5 62 66.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.2e-10 69.3 67 62.7
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-10 69.3 67 62.7
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-10 69.3 67 62.7
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 3.8e-10 68.6 68 61.8
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 3.8e-10 68.6 58 65.5
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 8.4e-10 67.4 67 61.2
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.4e-09 66.6 55 72.7
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.4e-09 66.6 70 61.4
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.9e-09 66.2 63 65.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.9e-09 66.2 62 64.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 7.1e-09 64.3 70 60.0
Gohir.A04G093800 Gossypium hirsutum HOM05D003628 ORTHO05D218432 9.3e-09 63.9 34 91.2
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.6e-08 63.2 55 65.5
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.7e-08 62.4 70 57.1
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.7e-08 62.4 62 61.3
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.7e-08 62.4 62 62.9
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 2.7e-08 62.4 62 62.9
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.5e-08 62.0 62 62.9
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 3.5e-08 62.0 60 66.7
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 3.5e-08 62.0 68 63.2
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 4.6e-08 61.6 62 61.3
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 7.9e-08 60.8 60 63.3
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.0e-07 60.5 61 62.3
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 5.1e-07 58.2 48 68.8
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 8.7e-07 57.4 57 63.2
Gohir.A03G037650 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-06 57.0 27 96.3
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.9e-06 56.2 51 68.6
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.5e-06 55.8 57 61.4
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.5e-06 55.8 66 56.1
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 7.4e-06 54.3 52 59.6
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 9.6e-06 53.9 55 60.0


User provided reference genes

Program Settings