Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 5.1e-57 224.2 112 100.0
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 5.1e-57 224.2 112 100.0
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.1e-57 224.2 112 100.0
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 8.2e-39 163.7 106 85.8
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.0e-33 146.7 108 69.4
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.8e-33 146.0 109 71.6
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 3.9e-33 144.8 107 74.8
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.6e-32 142.1 109 68.8
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 4.8e-31 137.9 106 73.6
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.4e-30 136.3 106 71.7
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 2.4e-30 135.6 107 72.0
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 2.0e-29 132.5 107 69.2
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.4e-29 131.7 96 72.9
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 3.4e-29 131.7 108 67.6
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.7e-29 130.6 96 71.9
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 1.7e-28 129.4 107 68.2
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.9e-28 128.6 95 71.6
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 2.9e-28 128.6 107 69.2
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 6.5e-28 127.5 111 65.8
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 6.5e-28 127.5 106 67.0
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 8.5e-28 127.1 111 64.9
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 3.2e-27 125.2 104 64.4
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 3.2e-27 125.2 103 66.0
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 7.2e-27 124.0 99 67.7
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 3.6e-26 121.7 110 58.2
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 6.1e-26 120.9 99 65.7
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 8.0e-26 120.6 108 62.0
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 8.0e-26 120.6 108 65.7
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 1.0e-25 120.2 114 64.9
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 1.8e-25 119.4 100 64.0
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 3.0e-25 118.6 110 57.3
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 5.2e-25 117.9 97 71.1
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 6.7e-25 117.5 104 65.4
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 8.8e-25 117.1 98 66.3
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 8.8e-25 117.1 109 64.2
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 8.8e-25 117.1 110 57.3
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.1e-24 116.7 108 61.1
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 1.1e-24 116.7 109 57.8
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 2.0e-24 115.9 114 62.3
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.6e-24 115.5 106 63.2
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 7.4e-24 114.0 110 64.5
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 2.2e-23 112.5 109 61.5
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 2.2e-23 112.5 106 60.4
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 2.8e-23 112.1 94 66.0
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 2.8e-23 112.1 107 58.9
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 3.7e-23 111.7 110 62.7
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 3.7e-23 111.7 109 55.0
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 4.8e-23 111.3 106 58.5
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 6.3e-23 110.9 107 62.6
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 8.2e-23 110.5 110 54.5
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 1.1e-22 110.2 106 56.6
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.4e-22 109.8 106 60.4
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 3.1e-22 108.6 78 74.4
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 9.1e-22 107.1 110 60.0
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 1.2e-21 106.7 113 54.0
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 1.6e-21 106.3 106 54.7
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 2.0e-21 105.9 109 55.0
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 2.0e-21 105.9 99 63.6
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.0e-21 105.9 102 60.8
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.6e-21 105.5 104 56.7
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 2.6e-21 105.5 109 55.0
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 4.5e-21 104.8 106 54.7
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 5.9e-21 104.4 103 57.3
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.0e-20 101.3 109 55.0
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 6.5e-20 100.9 110 53.6
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 8.5e-20 100.5 110 54.5
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 8.5e-20 100.5 110 54.5
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.5e-19 99.8 109 55.0
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 4.2e-19 98.2 109 56.9
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 5.5e-19 97.8 71 70.4
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.5e-19 97.8 109 53.2
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 1.6e-18 96.3 103 55.3
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 3.6e-18 95.1 101 58.4
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 6.1e-18 94.4 105 54.3
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 8.0e-18 94.0 109 53.2
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 2.3e-17 92.4 87 59.8
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 4.0e-17 91.7 93 60.2
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 1.5e-16 89.7 79 64.6
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 2.0e-16 89.4 113 54.9
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 2.6e-16 89.0 109 51.4
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 5.7e-16 87.8 116 45.7
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 5.7e-16 87.8 80 55.0
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.7e-15 86.3 120 45.0
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 5.3e-14 81.3 97 52.6
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 1.6e-13 79.7 84 52.4
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.6e-10 69.7 90 45.6
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 3.6e-10 68.6 64 54.7
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 8.0e-10 67.4 69 49.3
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.8e-09 64.3 48 64.6
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.0e-08 62.8 50 54.0
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.6e-08 62.4 50 60.0
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.4e-08 62.0 48 60.4
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.4e-08 62.0 50 56.0
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 5.7e-08 61.2 73 46.6
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 7.5e-08 60.8 51 52.9
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.5e-08 60.8 48 60.4
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 9.8e-08 60.5 57 50.9
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 9.8e-08 60.5 49 59.2
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.3e-07 60.1 47 55.3
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-07 60.1 48 56.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.7e-07 59.7 50 58.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.7e-07 59.7 46 58.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.2e-07 59.3 48 56.2
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.2e-07 59.3 48 56.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-07 59.3 48 56.2
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.2e-07 59.3 48 58.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.2e-07 59.3 49 59.2
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 2.8e-07 58.9 93 44.1
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.8e-07 58.9 50 56.0
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 3.7e-07 58.5 70 44.3
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 3.7e-07 58.5 48 54.2
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.7e-07 58.5 59 49.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.8e-07 58.2 51 52.9
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 4.8e-07 58.2 86 38.4
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.8e-07 58.2 49 55.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 4.8e-07 58.2 48 58.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 4.8e-07 58.2 48 58.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 6.3e-07 57.8 48 56.2
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.3e-07 57.8 48 56.2
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 6.3e-07 57.8 61 50.8
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 6.3e-07 57.8 49 55.1
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 6.3e-07 57.8 49 55.1
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 6.3e-07 57.8 49 55.1
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 8.3e-07 57.4 49 53.1
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 8.3e-07 57.4 92 37.0
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 8.3e-07 57.4 48 54.2
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.3e-07 57.4 47 57.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.3e-07 57.4 48 54.2
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 8.3e-07 57.4 67 49.3
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.1e-06 57.0 53 52.8
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 54.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 54.2
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.4e-06 56.6 76 43.4
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.4e-06 56.6 65 44.6
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.4e-06 56.6 53 52.8
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 1.4e-06 56.6 83 36.1
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.8e-06 56.2 57 47.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.8e-06 56.2 56 51.8
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 1.8e-06 56.2 53 50.9
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.4e-06 55.8 68 42.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-06 55.8 50 54.0
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 2.4e-06 55.8 61 44.3
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 2.4e-06 55.8 48 52.1
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.4e-06 55.8 62 51.6
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 3.1e-06 55.5 51 52.9
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 3.1e-06 55.5 49 55.1
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 3.1e-06 55.5 73 42.5
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 3.1e-06 55.5 44 54.5
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.1e-06 55.1 52 53.8
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.1e-06 55.1 68 42.6
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 4.1e-06 55.1 51 51.0
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 4.1e-06 55.1 51 54.9
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 5.4e-06 54.7 89 37.1
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 5.4e-06 54.7 52 48.1
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 5.4e-06 54.7 55 47.3
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.4e-06 54.7 51 51.0
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 5.4e-06 54.7 53 52.8
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 5.4e-06 54.7 75 44.0
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.0e-06 54.3 52 51.9
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.0e-06 54.3 51 52.9
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.0e-06 54.3 47 57.4
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 7.0e-06 54.3 71 40.8
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 7.0e-06 54.3 52 51.9
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 9.1e-06 53.9 71 42.3
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 9.1e-06 53.9 52 55.8
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 9.1e-06 53.9 51 51.0


User provided reference genes

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