Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 2.4e-134 482.3 256 100.0
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.0e-108 397.1 256 85.9
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 1.4e-102 376.7 256 83.2
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 3.7e-95 352.1 253 77.5
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 1.2e-93 347.1 253 77.9
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 3.1e-73 279.3 248 64.5
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 3.1e-73 279.3 248 64.5
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 2.0e-72 276.6 253 62.8
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 8.3e-71 271.2 253 61.3
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 1.9e-70 270.0 248 63.3
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 9.2e-70 267.7 253 61.3
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 9.2e-70 267.7 249 61.4
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 6.0e-69 265.0 249 59.8
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 2.3e-68 263.1 248 62.1
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 3.9e-68 262.3 253 58.5
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 3.3e-67 259.2 253 60.5
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 5.6e-67 258.5 251 58.6
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 5.6e-67 258.5 253 58.9
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 4.7e-66 255.4 253 58.9
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 4.7e-66 255.4 253 58.9
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 8.9e-65 251.1 253 57.7
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 8.9e-65 251.1 251 58.2
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 4.4e-64 248.8 258 57.4
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 7.5e-64 248.1 251 56.2
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 2.2e-63 246.5 251 56.6
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 3.7e-63 245.7 251 56.6
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 1.9e-62 243.4 251 56.6
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 9.2e-62 241.1 251 56.2
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 1.2e-61 240.7 253 55.7
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 2.7e-61 239.6 251 55.8
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 7.8e-61 238.0 253 56.1
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 1.0e-60 237.7 253 53.8
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 1.3e-60 237.3 251 56.6
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 1.3e-60 237.3 255 53.7
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 1.7e-60 236.9 255 53.7
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 3.0e-60 236.1 251 55.0
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.0e-60 236.1 258 56.6
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 5.1e-60 235.3 253 53.8
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 5.1e-60 235.3 253 54.2
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 1.9e-59 233.4 249 53.0
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 3.3e-59 232.6 229 57.6
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 5.6e-59 231.9 253 53.8
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 7.3e-59 231.5 253 54.2
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 1.6e-58 230.3 253 53.4
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 6.2e-58 228.4 269 52.0
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 2.4e-57 226.5 250 52.0
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 4.0e-57 225.7 250 52.0
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 1.5e-56 223.8 245 54.7
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 2.0e-56 223.4 278 50.4
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 2.0e-56 223.4 245 50.6
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 2.0e-56 223.4 250 54.8
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 2.0e-56 223.4 250 51.6
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 2.9e-55 219.5 253 53.4
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 2.9e-55 219.5 253 51.4
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 2.9e-55 219.5 243 55.6
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.1e-54 217.6 217 57.1
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 9.2e-54 214.5 241 49.4
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 9.2e-54 214.5 249 49.8
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 1.6e-53 213.8 203 64.0
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 2.1e-53 213.4 250 51.2
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 6.0e-53 211.8 253 50.6
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 1.1e-51 207.6 300 43.7
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 9.6e-51 204.5 260 49.6
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 1.1e-49 201.1 232 49.6
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 1.4e-49 200.7 251 50.6
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 2.4e-49 199.9 260 50.4
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 3.1e-49 199.5 205 53.2
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 4.0e-49 199.1 232 49.1
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 9.0e-49 198.0 194 58.8
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 2.4e-46 189.9 251 45.8
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.2e-46 189.5 235 46.4
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 3.0e-44 183.0 264 45.1
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 1.1e-41 174.5 203 50.7
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 1.5e-40 170.6 276 42.4
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 6.4e-39 165.2 251 41.4
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.2e-38 162.9 249 41.4
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 5.4e-38 162.2 251 41.0
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 7.1e-38 161.8 249 42.2
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.5e-37 159.5 249 42.2
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.4e-33 146.7 238 40.8
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 4.0e-33 146.0 148 55.4
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 5.8e-32 142.1 147 58.5
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 8.4e-31 138.3 249 38.6
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 1.6e-29 134.0 167 50.9
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 2.7e-29 133.3 126 57.9
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 7.4e-27 125.2 145 49.7
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 4.8e-26 122.5 126 55.6
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 5.3e-25 119.0 123 56.1
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 2.6e-24 116.7 126 50.0
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 8.2e-18 95.1 132 40.2
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 7.7e-16 88.6 101 56.4
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 1.4e-14 84.3 248 27.8
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 3.6e-13 79.7 78 52.6
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.8e-12 77.4 176 34.7
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 8.8e-12 75.1 97 48.5
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 7.4e-11 72.0 108 42.6
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 5.3e-09 65.9 55 61.8
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 1.5e-08 64.3 103 45.6
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 4.5e-08 62.8 63 52.4
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 1.9e-06 57.4 61 49.2
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 2.5e-06 57.0 47 61.7


User provided reference genes

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