Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.2e-267 924.1 456 100.0
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 5.9e-253 877.1 440 98.4
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.2e-250 869.4 444 97.3
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.3e-227 791.6 440 86.8
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.2e-218 763.1 440 84.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.4e-215 750.7 440 82.3
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.2e-201 704.5 440 75.5
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.9e-198 696.0 440 75.9
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.7e-196 689.5 436 75.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.5e-195 686.4 438 74.2
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 9.6e-195 683.7 441 74.1
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 4.8e-194 681.4 439 72.7
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-192 675.6 419 77.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.6e-192 675.6 439 72.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.9e-191 672.2 440 73.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.8e-191 671.8 437 72.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 7.1e-190 667.5 439 72.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 9.3e-190 667.2 437 72.1
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.7e-189 665.6 440 73.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.5e-187 659.1 438 71.9
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 5.6e-187 657.9 440 72.7
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 3.7e-186 655.2 440 71.4
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.1e-185 653.7 437 70.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.8e-185 652.9 437 70.9
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.1e-185 652.1 440 71.4
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.3e-185 651.4 437 70.9
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.3e-185 651.4 437 70.7
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.0e-185 650.6 440 70.7
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 9.0e-185 650.6 441 69.6
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.2e-184 650.2 459 68.4
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-184 649.8 439 70.4
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.6e-184 649.0 437 71.4
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.9e-184 647.1 437 70.7
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.7e-183 646.4 440 70.0
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.2e-183 646.0 438 70.3
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.2e-183 646.0 440 69.8
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.1e-182 643.7 440 70.0
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.6e-181 639.8 437 70.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.1e-181 639.4 437 70.3
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.0e-180 635.6 441 68.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.5e-179 633.3 441 69.2
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.9e-179 632.9 438 68.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 2.5e-179 632.5 440 68.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.2e-178 627.9 437 69.8
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 8.2e-178 627.5 439 68.6
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.4e-177 625.9 441 69.2
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 6.9e-177 624.4 437 68.2
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 6.9e-177 624.4 439 66.3
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 5.8e-176 621.3 437 66.4
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.0e-175 620.5 441 68.0
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 4.9e-175 618.2 437 68.2
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 8.4e-175 617.5 439 65.8
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.1e-174 617.1 420 70.5
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 2.5e-174 615.9 439 66.1
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 7.1e-174 614.4 438 67.8
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.5e-173 612.1 437 65.7
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 4.6e-173 611.7 439 66.1
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.3e-172 609.4 439 65.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.9e-171 606.3 439 65.1
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.7e-171 604.7 438 65.5
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.8e-170 601.7 433 65.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 8.2e-170 600.9 437 64.8
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.8e-169 599.7 439 63.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-169 599.0 434 65.9
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 4.1e-169 598.6 440 66.8
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.5e-168 595.1 437 64.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-167 592.0 438 65.1
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.8e-167 592.0 437 64.5
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 3.8e-167 592.0 441 65.3
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 6.5e-167 591.3 438 64.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 8.5e-167 590.9 437 64.5
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 8.5e-167 590.9 438 63.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-166 589.7 438 63.9
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.5e-166 589.3 440 65.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-166 588.6 438 63.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 9.3e-166 587.4 438 64.4
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 9.3e-166 587.4 438 64.4
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 9.3e-166 587.4 438 64.8
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-165 587.0 438 64.6
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.9e-163 579.7 432 63.7
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.3e-162 574.7 437 63.2
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.1e-161 572.0 437 64.8
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.3e-161 571.6 439 61.7
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 9.1e-161 570.9 432 61.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-160 570.1 432 61.6
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-160 568.9 433 61.2
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.5e-160 568.5 438 62.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.9e-160 568.2 432 62.3
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-159 567.4 432 61.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-159 567.0 432 61.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-159 565.5 433 61.2
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 3.8e-159 565.5 437 63.4
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-157 560.5 440 62.5
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.2e-157 560.5 432 62.3
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.3e-156 556.2 435 61.6
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 3.3e-155 552.4 442 60.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 2.8e-154 549.3 447 59.5
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.4e-153 547.0 462 61.7
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.3e-151 540.4 412 65.0
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 3.8e-151 538.9 439 60.4
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.2e-150 535.8 432 60.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.7e-149 532.7 416 62.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 3.6e-149 532.3 464 57.5
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 3.6e-149 532.3 438 56.8
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-148 530.0 438 60.0
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 8.8e-148 527.7 447 56.6
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.1e-145 519.2 343 72.3
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 5.3e-145 518.5 410 59.3
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.6e-144 516.9 438 55.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.9e-143 512.7 420 60.5
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.5e-142 510.4 438 61.4
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.5e-139 500.4 397 62.2
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-138 497.3 434 58.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.7e-136 489.6 437 53.1
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-131 472.2 368 61.7
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 9.8e-131 471.1 340 65.3
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 7.7e-128 461.5 482 50.4
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-124 450.3 420 56.4
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 8.9e-124 448.0 337 62.3
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 4.9e-122 442.2 430 54.0
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.2e-115 421.0 475 47.8
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 5.2e-100 369.0 444 44.6
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 2.8e-93 346.7 255 68.6
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 2.2e-90 337.0 404 45.0
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 9.6e-86 321.6 200 79.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-85 320.9 200 79.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 5.8e-83 312.4 427 41.0
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.2e-73 280.0 190 69.5
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.0e-71 273.5 244 54.1
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 8.7e-63 245.4 173 68.2
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.1e-60 236.9 197 61.4
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-55 220.3 220 53.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 5.1e-55 219.5 148 67.6
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-52 211.8 219 51.1
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-52 210.3 377 37.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-42 178.3 273 39.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-40 171.4 289 38.8
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 6.3e-37 159.5 110 64.5
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 8.2e-37 159.1 177 49.7
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.2e-33 146.7 115 64.3
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 5.5e-33 146.4 254 36.6
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.3e-31 141.0 84 75.0
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 5.2e-31 139.8 93 75.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.2e-26 124.4 93 68.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-25 122.1 132 48.5
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.4e-23 115.2 89 62.9
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 3.3e-22 110.5 76 60.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-22 110.2 130 48.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-21 107.8 76 59.2
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 6.3e-21 106.3 105 50.5
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 8.3e-21 105.9 186 37.6
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.4e-20 104.4 120 44.2
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.7e-19 100.9 118 46.6
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-19 100.5 117 44.4
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 4.5e-19 100.1 54 70.4
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 5.9e-19 99.8 97 56.7
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.0e-18 99.0 56 75.0
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-18 97.1 118 44.9
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-17 95.5 80 55.0
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-16 91.7 134 45.5
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.2e-14 85.5 116 40.5
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.4e-14 84.0 54 68.5
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.3e-13 82.0 56 58.9
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-11 75.1 189 28.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-11 75.1 182 29.1
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 7.7e-11 72.8 64 51.6
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.3e-10 71.2 182 28.6
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.9e-09 68.2 64 45.3
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.5e-09 67.8 68 45.6
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.8e-07 61.6 49 65.3
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 3.0e-07 60.8 71 45.1
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 6.8e-07 59.7 47 53.2
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 3.4e-06 57.4 42 59.5


User provided reference genes

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