Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A01G096750 Gossypium hirsutum HOM05D004630 ORTHO05D005727 2.4e-119 432.2 220 100.0
Gorai.002G105900 Gossypium raimondii HOM05D004630 ORTHO05D005727 1.1e-114 416.8 220 96.8
Gohir.D01G081000 Gossypium hirsutum HOM05D004630 ORTHO05D005727 2.7e-94 349.0 220 83.6
Duzib187G1410 Durio zibethinus HOM05D004630 ORTHO05D005727 2.8e-83 312.4 204 78.9
COL.COLO4_38353 Corchorus olitorius HOM05D004630 ORTHO05D005727 2.5e-79 299.3 210 75.7
CARHR195960 Cardamine hirsuta HOM05D004630 ORTHO05D005727 9.7e-68 260.8 201 66.7
Actinidia37297 Actinidia chinensis HOM05D004630 ORTHO05D005727 6.3e-67 258.1 209 63.6
Aa31LG11G12420 Aethionema arabicum HOM05D004630 ORTHO05D005727 6.3e-67 258.1 200 68.0
AL6G28300 Arabidopsis lyrata HOM05D004630 ORTHO05D005727 8.2e-67 257.7 202 65.8
AT5G17250 Arabidopsis thaliana HOM05D004630 ORTHO05D005727 1.1e-66 257.3 202 67.3
BcaB08g36795 Brassica carinata HOM05D004630 ORTHO05D005727 1.4e-66 256.9 202 67.3
CSS0009392 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 1.4e-66 256.9 204 64.7
CSS0039221 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 1.4e-66 256.9 204 64.7
Carub.0006s1544 Capsella rubella HOM05D004630 ORTHO05D005727 1.4e-66 256.9 203 67.5
THA.LOC104820866 Tarenaya hassleriana HOM05D004630 ORTHO05D005727 2.4e-66 256.1 204 66.2
Haze_25597 Corylus avellana HOM05D004630 ORTHO05D005727 3.1e-66 255.8 209 62.7
TAR636G2703 Trochodendron aralioides HOM05D004630 ORTHO05D005727 3.1e-66 255.8 202 66.3
Thhalv10012592m.g Eutrema salsugineum HOM05D004630 ORTHO05D005727 6.9e-66 254.6 202 65.3
Actinidia21906 Actinidia chinensis HOM05D004630 ORTHO05D005727 1.5e-65 253.4 209 63.2
GSVIVG01034228001 Vitis vinifera HOM05D004630 ORTHO05D005727 1.5e-65 253.4 203 64.0
Ciclev10018715m.g Citrus clementina HOM05D004630 ORTHO05D005727 3.4e-65 252.3 208 62.5
A10p22150 Brassica napus HOM05D004630 ORTHO05D005727 4.5e-65 251.9 202 67.3
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 4.5e-65 251.9 209 62.2
BraA10t44274Z Brassica rapa HOM05D004630 ORTHO05D005727 5.9e-65 251.5 202 65.8
Sp6g26980 Schrenkiella parvula HOM05D004630 ORTHO05D005727 2.9e-64 249.2 204 64.7
Manes.11G127500 Manihot esculenta HOM05D004630 ORTHO05D005727 6.5e-64 248.1 209 61.7
BcaC04g18817 Brassica carinata HOM05D004630 ORTHO05D005727 8.5e-64 247.7 202 66.3
C09p59940 Brassica napus HOM05D004630 ORTHO05D005727 8.5e-64 247.7 202 66.3
BolC9t58830H Brassica oleracea HOM05D004630 ORTHO05D005727 8.5e-64 247.7 202 66.3
MD16G1131900 Malus domestica HOM05D004630 ORTHO05D005727 8.5e-64 247.7 208 62.5
Oeu028192.1 Olea europaea HOM05D004630 ORTHO05D005727 8.5e-64 247.7 206 62.6
QL02p088183 Quercus lobata HOM05D004630 ORTHO05D005727 8.5e-64 247.7 209 61.2
Rhsim10G0128800 Rhododendron simsii HOM05D004630 ORTHO05D005727 8.5e-64 247.7 209 61.7
MD13G1136600 Malus domestica HOM05D004630 ORTHO05D005727 1.4e-63 246.9 208 61.5
PSO210G5682 Papaver somniferum HOM05D004630 ORTHO05D005727 3.2e-63 245.7 206 60.7
Aqoxy7G01739 Aquilegia oxysepala HOM05D004630 ORTHO05D005727 9.4e-63 244.2 203 60.6
Potri.003G059300 Populus trichocarpa HOM05D004630 ORTHO05D005727 1.2e-62 243.8 208 62.5
Atru.chr1.2080 Acer truncatum HOM05D004630 ORTHO05D005727 2.7e-62 242.7 208 61.1
FvH4_4g21830 Fragaria vesca HOM05D004630 ORTHO05D005727 2.7e-62 242.7 209 61.7
Prupe.1G208800 Prunus persica HOM05D004630 ORTHO05D005727 2.7e-62 242.7 207 60.9
SalBow5G1401 Salvia bowleyana HOM05D004630 ORTHO05D005727 2.7e-62 242.7 201 60.7
Cpa.g.sc80.32 Carica papaya HOM05D004630 ORTHO05D005727 4.6e-62 241.9 247 54.3
Eucgr.B01002 Eucalyptus grandis HOM05D004630 ORTHO05D005727 4.6e-62 241.9 207 61.8
SalBow2G2706 Salvia bowleyana HOM05D004630 ORTHO05D005727 7.9e-62 241.1 201 60.7
RcHm_v2.0_Chr4g0428061 Rosa chinensis HOM05D004630 ORTHO05D005727 1.0e-61 240.7 209 61.7
Nn7g38087 Nelumbo nucifera HOM05D004630 ORTHO05D005727 2.3e-61 239.6 209 60.8
CiPaw.04G170700 Carya illinoinensis HOM05D004630 ORTHO05D005727 3.0e-61 239.2 206 60.7
PGR031G0128 Punica granatum HOM05D004630 ORTHO05D005727 3.9e-61 238.8 208 58.7
vmacro00088 Vaccinium macrocarpon HOM05D004630 ORTHO05D005727 5.1e-61 238.4 203 61.1
arahy.Tifrunner.gnm1.ann1.W5Q7UV Arachis hypogaea HOM05D004630 ORTHO05D005727 8.8e-61 237.7 207 59.4
SalBow6G4274 Salvia bowleyana HOM05D004630 ORTHO05D005727 8.8e-61 237.7 201 60.2
Lalb_Chr12g0200461 Lupinus albus HOM05D004630 ORTHO05D005727 2.0e-60 236.5 208 62.5
Hma1.2p1_0482F.1_g162686 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 4.4e-60 235.3 207 58.5
Hma1.2p1_0482F.1_g162689 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 4.4e-60 235.3 207 58.5
Hma1.2p1_1944F.1_g308560 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 4.4e-60 235.3 207 58.5
Sabra03G0033900 Salix brachista HOM05D004630 ORTHO05D005727 4.4e-60 235.3 205 61.0
SalBow7G2764 Salvia bowleyana HOM05D004630 ORTHO05D005727 4.4e-60 235.3 195 61.5
Hund12270 Selenicereus undatus HOM05D004630 ORTHO05D005727 5.7e-60 235.0 208 59.1
Migut.N03011 Erythranthe guttata HOM05D004630 ORTHO05D005727 1.3e-59 233.8 202 60.4
HanXRQChr17g0554761 Helianthus annuus HOM05D004630 ORTHO05D005727 6.3e-59 231.5 202 57.9
Cc03_g11340 Coffea canephora HOM05D004630 ORTHO05D005727 1.1e-58 230.7 202 59.9
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 1.1e-58 230.7 202 62.4
MSTRG.13783 Avicennia marina HOM05D004630 ORTHO05D005727 1.4e-58 230.3 202 58.4
Solyc07g014610.4 Solanum lycopersicum HOM05D004630 ORTHO05D005727 1.4e-58 230.3 207 62.8
CAN.G689.26 Capsicum annuum HOM05D004630 ORTHO05D005727 1.8e-58 229.9 203 63.1
AUR62019782 Chenopodium quinoa HOM05D004630 ORTHO05D005727 1.8e-58 229.9 209 56.9
Sopen07g005480 Solanum pennellii HOM05D004630 ORTHO05D005727 2.4e-58 229.6 203 63.1
CANSAT11G0088 Cannabis sativa HOM05D004630 ORTHO05D005727 3.1e-58 229.2 203 60.1
CsaV3_1G037410 Cucumis sativus L. HOM05D004630 ORTHO05D005727 3.1e-58 229.2 203 59.1
SHI11357 Sapria himalayana HOM05D004630 ORTHO05D005727 3.1e-58 229.2 203 59.6
ECA233G2342 Erigeron canadensis HOM05D004630 ORTHO05D005727 4.1e-58 228.8 204 59.3
Glyma.13G116800 Glycine max HOM05D004630 ORTHO05D005727 4.1e-58 228.8 207 60.9
Psat4g020520 Pisum sativum HOM05D004630 ORTHO05D005727 4.1e-58 228.8 206 59.7
AUR62010786 Chenopodium quinoa HOM05D004630 ORTHO05D005727 9.1e-58 227.6 209 56.5
Thecc.07G164200 Theobroma cacao HOM05D004630 ORTHO05D005727 1.2e-57 227.3 144 80.6
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 1.5e-57 226.9 206 59.7
Ca_21358_v3 Cicer arietinum L. HOM05D004630 ORTHO05D005727 4.5e-57 225.3 206 59.2
MELO3C002801.2 Cucumis melo HOM05D004630 ORTHO05D005727 7.7e-57 224.6 205 58.0
Phvul.003G124900 Phaseolus vulgaris HOM05D004630 ORTHO05D005727 1.0e-56 224.2 210 60.5
TPR.G12666 Trifolium pratense HOM05D004630 ORTHO05D005727 1.0e-56 224.2 202 59.4
Medtr4g123557 Medicago truncatula HOM05D004630 ORTHO05D005727 1.3e-56 223.8 206 59.2
EL10Ac5g12859 Beta vulgaris HOM05D004630 ORTHO05D005727 8.5e-56 221.1 209 55.5
MBI05_g35190_MAGBIO Magnolia biondii HOM05D004630 ORTHO05D005727 8.5e-56 221.1 187 62.0
Sed0000779 Sechium edule HOM05D004630 ORTHO05D005727 8.5e-56 221.1 200 59.5
VMungo1215G1222 Vigna mungo HOM05D004630 ORTHO05D005727 3.2e-55 219.2 207 60.4
unitig_578.g16518 Utricularia gibba HOM05D004630 ORTHO05D005727 7.2e-55 218.0 201 55.2
Actinidia28193 Actinidia chinensis HOM05D004630 ORTHO05D005727 1.6e-54 216.9 209 57.4
ATR0019G053 Amborella trichopoda HOM05D004630 ORTHO05D005727 2.1e-54 216.5 205 54.6
ClCG03G006320 Citrullus lanatus HOM05D004630 ORTHO05D005727 2.2e-51 206.5 217 53.9
Dinv43828 Davidia involucrata HOM05D004630 ORTHO05D005727 2.8e-51 206.1 205 57.6
Os10g0170300 Oryza sativa ssp. japonica HOM05D004630 ORTHO05D005727 9.1e-50 201.1 202 53.0
Peaxi162Scf00341g00622 Petunia axillaris HOM05D004630 ORTHO05D005727 2.6e-49 199.5 195 59.0
Rhsim05G0234800 Rhododendron simsii HOM05D004630 ORTHO05D005727 5.9e-49 198.4 211 55.9
Ah.12g052160 Amaranthus hybridus HOM05D004630 ORTHO05D005727 3.8e-48 195.7 208 50.0
PSO761G0235 Papaver somniferum HOM05D004630 ORTHO05D005727 1.9e-47 193.4 261 45.2
Nitab4.5_0000848g0070 Nicotiana tabacum HOM05D004630 ORTHO05D005727 3.2e-47 192.6 202 54.5
Nitab4.5_0004432g0030 Nicotiana tabacum HOM05D004630 ORTHO05D005727 5.5e-47 191.8 202 55.0
FAN07G0643 Fragaria x ananassa HOM05D004630 ORTHO05D005727 1.0e-45 187.6 179 55.9
FAN12G0960 Fragaria x ananassa HOM05D004630 ORTHO05D005727 1.8e-45 186.8 173 57.8
DCAR_009035 Daucus carota HOM05D004630 ORTHO05D005727 4.0e-45 185.7 203 51.7
arahy.Tifrunner.gnm1.ann1.N7874Q Arachis hypogaea HOM05D004630 ORTHO05D005727 1.5e-44 183.7 171 56.1
HPP92_010575 Vanilla planifolia HOM05D004630 ORTHO05D005727 4.5e-41 172.2 148 57.4
Lsat_1_v5_gn_8_137620 Lactuca sativa HOM05D004630 ORTHO05D005727 5.0e-40 168.7 175 52.0
Actinidia21669 Actinidia chinensis HOM05D004630 ORTHO05D005727 3.6e-38 162.5 138 59.4
Cfa003362 Carpinus fangiana HOM05D004630 ORTHO05D005727 4.7e-38 162.2 123 65.0
Pp3c19_7340 Physcomitrium patens HOM05D004630 ORTHO05D005727 6.3e-35 151.8 230 37.4
SEGI_40055 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 6.3e-35 151.8 130 58.5
SMO116G0486 Selaginella moellendorffii HOM05D004630 ORTHO05D005727 9.1e-34 147.9 213 39.9
AagrBONN_evm.TU.Sc2ySwM_344.4351 Anthoceros agrestis HOM05D004630 ORTHO05D005727 6.5e-32 141.7 207 40.1
Mapoly0027s0070 Marchantia polymorpha HOM05D004630 ORTHO05D005727 1.5e-31 140.6 215 37.2
CBR_g31522 Chara braunii HOM05D004630 ORTHO05D005727 1.9e-23 113.6 238 31.5
HPP92_010566 Vanilla planifolia HOM05D004630 ORTHO05D005727 6.1e-22 108.6 234 33.8
Actinidia18517 Actinidia chinensis HOM05D004630 ORTHO05D005727 1.8e-13 80.5 42 85.7
Peaxi162Scf01313g00120 Petunia axillaris HOM05D004630 ORTHO05D005727 4.1e-10 69.3 110 40.9
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 5.0e-08 62.4 141 32.6
CDE08G1048 Ceratophyllum demersum HOM05D004630 ORTHO05D005727 2.5e-07 60.1 74 43.2
SEGI_25015 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 1.2e-06 57.8 77 40.3
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 1.6e-06 57.4 164 26.8


User provided reference genes

Program Settings