Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.6e-149 531.2 262 100.0
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.0e-140 503.4 314 83.1
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.9e-139 499.2 314 82.5
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 1.2e-117 426.8 312 70.2
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 1.6e-114 416.4 313 68.7
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 8.2e-106 387.5 289 68.2
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 6.7e-92 341.3 313 56.9
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 2.4e-89 332.8 239 66.9
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 1.2e-88 330.5 237 67.5
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 2.2e-87 326.2 241 66.4
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 3.8e-87 325.5 237 67.5
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 6.5e-87 324.7 239 65.7
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 5.5e-86 321.6 313 55.0
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.0e-84 317.4 312 53.2
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 6.7e-84 314.7 313 52.7
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 8.8e-84 314.3 238 63.0
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 4.4e-83 312.0 242 62.4
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 9.7e-83 310.8 241 64.7
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 2.8e-82 309.3 241 63.9
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 1.4e-81 307.0 242 62.0
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 5.3e-81 305.1 310 50.0
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.0e-80 303.1 249 60.6
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.3e-79 300.4 241 61.8
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 2.2e-79 299.7 247 60.7
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 3.8e-79 298.9 238 60.5
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 1.4e-78 297.0 296 54.1
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 1.4e-78 297.0 313 48.2
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.9e-78 296.6 241 59.3
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 2.5e-78 296.2 238 60.9
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 5.5e-78 295.0 241 59.8
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 5.5e-78 295.0 241 59.3
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 7.2e-78 294.7 242 58.3
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 2.1e-77 293.1 239 62.8
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 3.6e-77 292.4 238 60.9
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 3.6e-77 292.4 238 60.9
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 3.6e-77 292.4 308 49.4
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 4.7e-77 292.0 240 59.2
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 6.1e-77 291.6 238 60.9
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 6.1e-77 291.6 312 49.7
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 8.0e-77 291.2 238 59.7
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 1.0e-76 290.8 238 60.5
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 1.8e-76 290.0 238 61.8
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 1.8e-76 290.0 241 58.9
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 3.0e-76 289.3 258 55.0
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 3.9e-76 288.9 238 60.5
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 1.1e-75 287.3 313 47.3
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 1.5e-75 287.0 239 57.7
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 2.6e-75 286.2 306 49.7
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 3.3e-75 285.8 312 48.7
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 4.4e-75 285.4 240 60.8
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 5.7e-75 285.0 241 57.3
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 7.4e-75 284.6 241 57.7
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 1.7e-74 283.5 239 55.2
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 2.8e-74 282.7 238 58.4
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 2.8e-74 282.7 241 56.0
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 4.8e-74 282.0 241 56.8
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 8.2e-74 281.2 236 58.1
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 3.1e-73 279.3 241 54.8
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 3.1e-73 279.3 236 55.9
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 3.1e-73 279.3 241 56.8
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 5.3e-73 278.5 237 59.9
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 9.1e-73 277.7 220 60.5
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 1.2e-72 277.3 240 56.2
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 1.6e-72 276.9 239 55.6
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 2.0e-72 276.6 241 56.0
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.0e-71 274.2 237 59.9
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 3.8e-71 272.3 237 58.2
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 1.5e-70 270.4 241 56.4
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 3.2e-70 269.2 248 53.6
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 4.2e-70 268.9 239 54.8
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 3.6e-69 265.8 243 55.1
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 3.6e-69 265.8 242 54.5
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 5.2e-68 261.9 241 53.9
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 8.8e-68 261.2 245 53.5
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 2.6e-67 259.6 243 53.9
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 3.4e-67 259.2 241 53.9
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 7.5e-67 258.1 245 53.1
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.8e-66 256.1 314 45.2
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 4.8e-66 255.4 239 53.1
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 6.3e-66 255.0 243 52.7
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 1.4e-65 253.8 219 55.7
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 4.1e-65 252.3 273 51.6
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 4.1e-65 252.3 211 59.7
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 1.6e-64 250.4 242 52.1
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 6.5e-63 245.0 237 51.5
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 2.5e-62 243.0 313 44.7
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 1.6e-61 240.4 260 48.1
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 5.7e-59 231.9 248 47.6
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 8.3e-58 228.0 213 52.1
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 4.1e-57 225.7 238 50.4
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 1.2e-53 214.2 219 49.3
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 2.8e-53 213.0 240 48.3
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.9e-47 193.0 308 38.0
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 8.0e-45 184.9 257 39.3
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 4.0e-44 182.6 242 41.3
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 3.2e-41 172.9 205 42.4
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 2.7e-40 169.9 138 55.8
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 4.6e-40 169.1 153 51.6
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 5.2e-36 155.6 238 37.8
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 6.4e-34 148.7 182 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-33 145.2 231 39.0
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 7.8e-32 141.7 120 57.5
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 2.9e-26 123.2 263 33.8
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 3.7e-26 122.9 138 44.2
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 2.1e-21 107.1 293 29.0
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 2.1e-13 80.5 101 41.6
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 1.6e-08 64.3 70 44.3


User provided reference genes

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