Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049813 Gossypium hirsutum HOM05D001778 ORTHO05D005872 2.0e-46 188.7 95 100.0
Thecc.03G322000 Theobroma cacao HOM05D001778 ORTHO05D005872 7.5e-17 90.5 50 94.0
Gohir.A03G000009 Gossypium hirsutum HOM05D001778 ORTHO05D005872 9.8e-17 90.1 50 96.0
Gohir.A04G148300 Gossypium hirsutum HOM05D001778 ORTHO05D005872 9.8e-17 90.1 50 96.0
COL.COLO4_16730 Corchorus olitorius HOM05D001778 ORTHO05D005872 6.3e-16 87.4 50 90.0
Sabra03G0073400 Salix brachista HOM05D001778 ORTHO05D005872 8.3e-16 87.0 50 90.0
GSVIVG01036912001 Vitis vinifera HOM05D001778 ORTHO05D005872 8.3e-16 87.0 50 90.0
Duzib205G1614 Durio zibethinus HOM05D001778 ORTHO05D005872 1.1e-15 86.7 50 90.0
Atru.chr6.2141 Acer truncatum HOM05D001778 ORTHO05D005872 1.8e-15 85.9 75 65.3
VMungo0251G2978 Vigna mungo HOM05D001778 ORTHO05D005872 2.4e-15 85.5 50 86.0
Cfa012632 Carpinus fangiana HOM05D001778 ORTHO05D005872 4.1e-15 84.7 50 86.0
ClCG07G011180 Citrullus lanatus HOM05D001778 ORTHO05D005872 4.1e-15 84.7 50 86.0
Haze_08034 Corylus avellana HOM05D001778 ORTHO05D005872 4.1e-15 84.7 50 86.0
MELO3C016212.2 Cucumis melo HOM05D001778 ORTHO05D005872 4.1e-15 84.7 50 86.0
CsaV3_4G007070 Cucumis sativus L. HOM05D001778 ORTHO05D005872 4.1e-15 84.7 50 86.0
Manes.17G002200 Manihot esculenta HOM05D001778 ORTHO05D005872 4.1e-15 84.7 50 88.0
Potri.003G106600 Populus trichocarpa HOM05D001778 ORTHO05D005872 5.4e-15 84.3 50 88.0
CSS0047621 Camellia sinensis var. sinensis HOM05D001778 ORTHO05D005872 7.0e-15 84.0 75 62.7
Glyma.09G216900 Glycine max HOM05D001778 ORTHO05D005872 7.0e-15 84.0 49 85.7
Gorai.003G187500 Gossypium raimondii HOM05D001778 ORTHO05D005872 7.0e-15 84.0 50 90.0
Duzib068G1340 Durio zibethinus HOM05D001778 ORTHO05D005872 9.1e-15 83.6 49 89.8
Glyma.16G076000 Glycine max HOM05D001778 ORTHO05D005872 9.1e-15 83.6 50 84.0
Lj2g0013343 Lotus japonicus HOM05D001778 ORTHO05D005872 9.1e-15 83.6 50 84.0
Ciclev10000893m.g Citrus clementina HOM05D001778 ORTHO05D005872 1.2e-14 83.2 50 86.0
Cc08_g04610 Coffea canephora HOM05D001778 ORTHO05D005872 1.2e-14 83.2 50 86.0
CSS0021828 Camellia sinensis var. sinensis HOM05D001778 ORTHO05D005872 1.6e-14 82.8 75 62.7
Ca_25064_v3 Cicer arietinum L. HOM05D001778 ORTHO05D005872 1.6e-14 82.8 50 84.0
Glyma.01G151700 Glycine max HOM05D001778 ORTHO05D005872 1.6e-14 82.8 49 83.7
Phvul.002G123800 Phaseolus vulgaris HOM05D001778 ORTHO05D005872 1.6e-14 82.8 49 85.7
Phvul.003G277700 Phaseolus vulgaris HOM05D001778 ORTHO05D005872 1.6e-14 82.8 50 84.0
VMungo1215G1640 Vigna mungo HOM05D000351 ORTHO05D005872 1.6e-14 82.8 49 85.7
CiPaw.12G053400 Carya illinoinensis HOM05D001778 ORTHO05D005872 2.0e-14 82.4 50 86.0
Cpa.g.sc24.54 Carica papaya HOM05D001778 ORTHO05D005872 3.5e-14 81.6 50 84.0
Glyma.16G107700 Glycine max HOM05D001778 ORTHO05D005872 3.5e-14 81.6 50 82.0
FAN13G1086 Fragaria x ananassa HOM05D001778 ORTHO05D005872 5.9e-14 80.9 50 84.0
Dinv37445 Davidia involucrata HOM05D001778 ORTHO05D005872 7.7e-14 80.5 50 84.0
Dinv09422 Davidia involucrata HOM05D001778 ORTHO05D005872 1.0e-13 80.1 49 81.6
Gohir.A08G148000 Gossypium hirsutum HOM05D001778 ORTHO05D005872 1.0e-13 80.1 51 84.3
Gorai.004G176400 Gossypium raimondii HOM05D001778 ORTHO05D005872 1.0e-13 80.1 51 84.3
MD16G1287000 Malus domestica HOM05D001778 ORTHO05D005872 1.0e-13 80.1 50 82.0
Sed0015190 Sechium edule HOM05D001778 ORTHO05D005872 1.0e-13 80.1 49 85.7
MD06G1013000 Malus domestica HOM05D001778 ORTHO05D005872 1.3e-13 79.7 75 60.0
Rhsim07G0141300 Rhododendron simsii HOM05D001778 ORTHO05D005872 1.7e-13 79.3 50 80.0
TWI32G0519 Tripterygium wilfordii HOM05D001778 ORTHO05D005872 1.7e-13 79.3 50 82.0
arahy.Tifrunner.gnm1.ann1.M8SWBU Arachis hypogaea HOM05D001778 ORTHO05D005872 2.3e-13 79.0 50 82.0
arahy.Tifrunner.gnm1.ann1.STSP6P Arachis hypogaea HOM05D001778 ORTHO05D005872 2.3e-13 79.0 50 82.0
Medtr5g026260 Medicago truncatula HOM05D001778 ORTHO05D005872 2.3e-13 79.0 52 82.7
RcHm_v2.0_Chr7g0214911 Rosa chinensis HOM05D001778 ORTHO05D005872 2.3e-13 79.0 50 82.0
Psat2g144280 Pisum sativum HOM05D001778 ORTHO05D005872 2.9e-13 78.6 52 80.8
Potri.001G127100 Populus trichocarpa HOM05D001778 ORTHO05D005872 2.9e-13 78.6 50 88.0
Sabra01G0098000 Salix brachista HOM05D001778 ORTHO05D005872 2.9e-13 78.6 50 88.0
EL10Ac5g12604 Beta vulgaris HOM05D001778 ORTHO05D005872 3.8e-13 78.2 50 82.0
Gohir.D08G169200 Gossypium hirsutum HOM05D001778 ORTHO05D005872 3.8e-13 78.2 51 82.4
Psat4g108480 Pisum sativum HOM05D001778 ORTHO05D005872 3.8e-13 78.2 49 81.6
Sed0011927 Sechium edule HOM05D001778 ORTHO05D005872 3.8e-13 78.2 50 80.0
Prupe.5G015800 Prunus persica HOM05D001778 ORTHO05D005872 5.0e-13 77.8 50 80.0
SGA_v2.0_scaffold89G27359 Striga asiatica HOM05D001778 ORTHO05D005872 5.0e-13 77.8 75 58.7
Eucgr.D02574 Eucalyptus grandis HOM05D001778 ORTHO05D005872 6.5e-13 77.4 50 80.0
FvH4_5g24480 Fragaria vesca HOM05D001778 ORTHO05D005872 6.5e-13 77.4 50 82.0
FAN13G0610 Fragaria x ananassa HOM05D001778 ORTHO05D005872 6.5e-13 77.4 50 82.0
FAN13G1529 Fragaria x ananassa HOM05D001778 ORTHO05D005872 6.5e-13 77.4 50 82.0
FAN18G0495 Fragaria x ananassa HOM05D001778 ORTHO05D005872 6.5e-13 77.4 50 82.0
FAN08G2077 Fragaria x ananassa HOM05D001778 ORTHO05D005872 8.6e-13 77.0 49 81.6
TPR.G16795 Trifolium pratense HOM05D001778 ORTHO05D005872 8.6e-13 77.0 49 79.6
Migut.A00487 Erythranthe guttata HOM05D001778 ORTHO05D005872 1.1e-12 76.6 50 76.0
Aqoxy4G00508 Aquilegia oxysepala HOM05D001778 ORTHO05D005872 1.5e-12 76.3 50 78.0
Medtr8g072020 Medicago truncatula HOM05D001778 ORTHO05D005872 1.5e-12 76.3 49 77.6
FAN04G2563 Fragaria x ananassa HOM05D001778 ORTHO05D005872 1.9e-12 75.9 50 80.0
Hma1.2p1_0262F.1_g105213 Hydrangea macrophylla HOM05D001778 ORTHO05D005872 1.9e-12 75.9 50 78.0
Hma1.2p1_1969F.1_g309500 Hydrangea macrophylla HOM05D001778 ORTHO05D005872 1.9e-12 75.9 50 78.0
Nn1g09324 Nelumbo nucifera HOM05D001778 ORTHO05D005872 2.5e-12 75.5 50 78.0
Sc07g0008150 Simmondsia chinensis HOM05D001778 ORTHO05D005872 3.2e-12 75.1 50 76.0
TAR629G1808 Trochodendron aralioides HOM05D001778 ORTHO05D005872 3.2e-12 75.1 50 78.0
PSO782G3288 Papaver somniferum HOM05D001778 ORTHO05D005872 4.2e-12 74.7 76 59.2
TPR.G30317 Trifolium pratense HOM05D001778 ORTHO05D005872 4.2e-12 74.7 51 80.4
AUR62010503 Chenopodium quinoa HOM05D001778 ORTHO05D005872 5.5e-12 74.3 50 80.0
Ca_22469_v3 Cicer arietinum L. HOM05D001778 ORTHO05D005872 5.5e-12 74.3 50 78.0
TWI60G1341 Tripterygium wilfordii HOM05D001778 ORTHO05D005872 5.5e-12 74.3 50 80.0
DCAR_030947 Daucus carota HOM05D001778 ORTHO05D005872 7.2e-12 73.9 49 81.6
Hma1.2p1_0294F.1_g116460 Hydrangea macrophylla HOM05D001778 ORTHO05D005872 7.2e-12 73.9 50 74.0
Lalb_Chr16g0380521 Lupinus albus HOM05D001778 ORTHO05D005872 9.5e-12 73.6 51 76.5
Ah.12g058300 Amaranthus hybridus HOM05D000027 ORTHO05D005872 1.2e-11 73.2 50 74.0
PSO063G4066 Papaver somniferum HOM05D001778 ORTHO05D005872 1.2e-11 73.2 76 57.9
AUR62017397 Chenopodium quinoa HOM05D001778 ORTHO05D005872 1.6e-11 72.8 50 80.0
Hund14314 Selenicereus undatus HOM05D001778 ORTHO05D005872 1.6e-11 72.8 50 76.0
Lj8C369T4 Lonicera japonica HOM05D001778 ORTHO05D005872 2.1e-11 72.4 51 74.5
MSTRG.11845 Avicennia marina HOM05D001778 ORTHO05D005872 2.8e-11 72.0 50 74.0
Lsat_1_v5_gn_6_74361 Lactuca sativa HOM05D001778 ORTHO05D005872 2.8e-11 72.0 75 53.3
Ah.02g116320 Amaranthus hybridus HOM05D007105 ORTHO05D009304 4.7e-11 71.2 50 72.0
Solyc08g075080.3 Solanum lycopersicum HOM05D001778 ORTHO05D005872 4.7e-11 71.2 50 72.0
Sopen08g023710 Solanum pennellii HOM05D001778 ORTHO05D005872 4.7e-11 71.2 50 72.0
PGSC0003DMG400020819 Solanum tuberosum HOM05D001778 ORTHO05D005872 4.7e-11 71.2 50 72.0
MSTRG.25757 Avicennia marina HOM05D001778 ORTHO05D005872 6.1e-11 70.9 50 74.0
Os05g0389600 Oryza sativa ssp. japonica HOM05D001778 ORTHO05D005872 6.1e-11 70.9 49 73.5
Lalb_Chr09g0325111 Lupinus albus HOM05D001778 ORTHO05D005872 1.0e-10 70.1 52 71.2
Nitab4.5_0000623g0050 Nicotiana tabacum HOM05D001778 ORTHO05D005872 1.0e-10 70.1 50 72.0
Nitab4.5_0007008g0010 Nicotiana tabacum HOM05D001778 ORTHO05D005872 1.0e-10 70.1 49 73.5
CDE06G1697 Ceratophyllum demersum HOM05D001778 ORTHO05D005872 1.8e-10 69.3 75 54.7
Aa31LG9G7750 Aethionema arabicum HOM05D001778 ORTHO05D005872 2.3e-10 68.9 51 74.5
vmacro00111 Vaccinium macrocarpon HOM05D001778 ORTHO05D005872 5.2e-10 67.8 70 55.7
ATR0568G100 Amborella trichopoda HOM05D001778 ORTHO05D005872 8.8e-10 67.0 49 71.4
THA.LOC104812893 Tarenaya hassleriana HOM05D001778 ORTHO05D005872 2.0e-09 65.9 51 72.5
CANSAT35G1009 Cannabis sativa HOM05D001778 ORTHO05D005872 5.7e-09 64.3 75 54.7
CARHR176850 Cardamine hirsuta HOM05D001778 ORTHO05D005872 5.7e-09 64.3 51 76.5
CiPaw.11G077400 Carya illinoinensis HOM05D001778 ORTHO05D005872 7.5e-09 63.9 50 72.0
PGR031G1520 Punica granatum HOM05D001778 ORTHO05D005872 9.8e-09 63.5 50 72.0
THA.LOC104806204 Tarenaya hassleriana HOM05D001778 ORTHO05D005872 9.8e-09 63.5 45 77.8
Zm00001eb287150 Zea mays HOM05D001778 ORTHO05D005872 9.8e-09 63.5 50 70.0
AL8G13520 Arabidopsis lyrata HOM05D001778 ORTHO05D005872 1.3e-08 63.2 51 74.5
AT5G45290 Arabidopsis thaliana HOM05D001778 ORTHO05D005872 1.3e-08 63.2 51 74.5
Carub.0008s0286 Capsella rubella HOM05D001778 ORTHO05D005872 1.3e-08 63.2 51 74.5
unitig_32.g10955 Utricularia gibba HOM05D001778 ORTHO05D005872 1.3e-08 63.2 49 67.3
HPP92_002553 Vanilla planifolia HOM05D001778 ORTHO05D005872 1.3e-08 63.2 75 49.3
Zm00001eb350790 Zea mays HOM05D001778 ORTHO05D005872 1.3e-08 63.2 76 51.3
HPP92_015132 Vanilla planifolia HOM05D001778 ORTHO05D005872 2.2e-08 62.4 49 67.3
Thhalv10000852m.g Eutrema salsugineum HOM05D001778 ORTHO05D005872 3.7e-08 61.6 54 70.4
Rhsim11G0040400 Rhododendron simsii HOM05D000404 ORTHO05D002003 3.7e-08 61.6 44 72.7
Peaxi162Scf00014g01720 Petunia axillaris HOM05D001778 ORTHO05D005872 6.3e-08 60.8 42 78.6
Sp2g10230 Schrenkiella parvula HOM05D001778 ORTHO05D005872 6.3e-08 60.8 53 69.8
BcaC06g31561 Brassica carinata HOM05D001778 ORTHO05D005872 8.3e-08 60.5 54 68.5
Gohir.A05G416201 Gossypium hirsutum HOM05D013271 ORTHO05D047379 8.3e-08 60.5 31 100.0
BcaC06g34448 Brassica carinata HOM05D001778 ORTHO05D005872 1.1e-07 60.1 55 67.3
A06p46690 Brassica napus HOM05D001778 ORTHO05D005872 1.1e-07 60.1 55 67.3
C07p28340 Brassica napus HOM05D001778 ORTHO05D005872 1.1e-07 60.1 55 67.3
BolC7t43374H Brassica oleracea HOM05D001778 ORTHO05D005872 1.1e-07 60.1 55 67.3
BraA06t27541Z Brassica rapa HOM05D001778 ORTHO05D005872 1.1e-07 60.1 55 67.3
Gorai.003G000200 Gossypium raimondii HOM05D013271 ORTHO05D047379 1.1e-07 60.1 31 96.8
Nn3g19165 Nelumbo nucifera HOM05D001778 ORTHO05D005872 2.4e-07 58.9 50 66.0
Actinidia30333 Actinidia chinensis HOM05D001778 ORTHO05D005872 5.4e-07 57.8 75 49.3
HanXRQChr03g0082781 Helianthus annuus HOM05D001778 ORTHO05D005872 9.2e-07 57.0 49 65.3
HanXRQChr13g0413221 Helianthus annuus HOM05D001778 ORTHO05D005872 2.7e-06 55.5 48 66.7
SEGI_07537 Sequoiadendron giganteum HOM05D001778 ORTHO05D005872 3.5e-06 55.1 50 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2573 Anthoceros agrestis HOM05D001778 ORTHO05D005872 7.8e-06 53.9 44 63.6


User provided reference genes

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