Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-148 528.9 253 100.0
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 5.1e-121 438.0 253 85.4
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-120 436.8 253 85.0
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 6.4e-39 165.2 143 61.5
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.7e-36 157.1 197 49.7
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.1e-35 154.5 226 44.2
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 4.7e-34 149.1 124 66.9
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 4.7e-34 149.1 124 66.9
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 4.7e-34 149.1 124 66.9
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 4.7e-34 149.1 124 66.9
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.4e-32 142.9 122 64.8
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.4e-32 142.9 122 64.8
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 4.4e-32 142.5 124 64.5
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.3e-31 141.0 122 65.6
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 7.0e-30 135.2 100 73.0
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.2e-29 134.4 178 50.6
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-29 134.0 180 48.3
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 7.8e-29 131.7 154 53.9
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-28 131.0 167 47.9
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 1.7e-28 130.6 122 62.3
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 4.3e-27 125.9 131 58.8
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 9.5e-27 124.8 60 100.0
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 9.5e-27 124.8 60 100.0
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 2.1e-26 123.6 132 54.5
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 8.1e-26 121.7 59 98.3
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 6.8e-25 118.6 60 93.3
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 8.9e-25 118.2 58 98.3
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 8.9e-25 118.2 62 91.9
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 1.7e-23 114.0 60 91.7
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 1.7e-23 114.0 102 64.7
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.7e-23 114.0 60 95.0
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 1.1e-22 111.3 79 73.4
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 1.1e-22 111.3 79 73.4
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 1.1e-22 111.3 79 73.4
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 1.1e-22 111.3 79 73.4
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.9e-22 110.5 79 72.2
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 1.9e-22 110.5 79 72.2
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.9e-22 110.5 79 72.2
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.9e-22 110.5 79 72.2
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 1.9e-22 110.5 79 72.2
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-22 110.2 126 55.6
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 5.4e-22 109.0 79 70.9
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 1.2e-21 107.8 186 44.1
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.1e-21 107.1 79 70.9
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.1e-21 107.1 79 70.9
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.1e-21 107.1 79 70.9
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 3.5e-21 106.3 79 69.6
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 3.5e-21 106.3 196 39.3
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 4.6e-21 105.9 60 83.3
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 6.0e-21 105.5 87 63.2
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.0e-20 104.8 79 70.9
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 2.3e-20 103.6 79 68.4
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.3e-20 103.6 79 68.4
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 6.6e-20 102.1 50 96.0
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 6.6e-20 102.1 74 71.6
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 8.6e-20 101.7 79 67.1
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.9e-19 100.5 79 68.4
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.5e-19 100.1 79 65.8
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 5.6e-19 99.0 99 57.6
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.3e-19 98.6 83 61.4
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 1.4e-17 94.4 79 65.8
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.4e-17 94.4 79 64.6
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.4e-17 93.6 79 64.6
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 5.2e-17 92.4 120 46.7
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 1.5e-16 90.9 49 85.7
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.5e-16 90.9 49 85.7
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.5e-16 90.9 49 85.7
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 1.5e-16 90.9 49 85.7
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.5e-16 90.9 49 85.7
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.5e-16 90.9 49 85.7
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.5e-16 90.9 49 85.7
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 1.5e-16 90.9 74 63.5
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 1.5e-16 90.9 49 85.7
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 3.4e-16 89.7 79 59.5
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 4.4e-16 89.4 49 85.7
CsaV3_UNG208380 Cucumis sativus L. HOM05D011602 ORTHO05D011791 5.8e-16 89.0 86 57.0
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 5.8e-16 89.0 49 83.7
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.6e-16 88.6 72 62.5
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.3e-15 87.8 79 62.0
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.3e-15 87.8 81 61.7
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 1.7e-15 87.4 103 51.5
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 2.2e-15 87.0 49 83.7
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.2e-15 87.0 102 52.0
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.2e-15 87.0 102 52.0
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.2e-15 87.0 102 52.0
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.2e-15 87.0 102 52.0
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.2e-15 87.0 102 52.0
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.9e-15 86.7 49 83.7
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 2.9e-15 86.7 49 83.7
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 8.4e-15 85.1 42 95.2
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 8.4e-15 85.1 67 65.7
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.1e-14 84.7 79 59.5
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 1.4e-14 84.3 42 92.9
Gohir.D08G098025 Gossypium hirsutum HOM05D011602 ORTHO05D011791 1.4e-14 84.3 86 55.8
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.4e-14 84.3 49 79.6
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.9e-14 84.0 49 79.6
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 2.7e-13 80.1 49 75.5
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.7e-13 80.1 50 80.0
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.5e-13 79.7 72 55.6
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 3.5e-13 79.7 53 67.9
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 4.6e-13 79.3 49 75.5
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 6.0e-13 79.0 49 75.5
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.0e-12 78.2 49 73.5
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.3e-12 77.8 72 54.2
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.3e-12 77.0 90 52.2
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 3.9e-12 76.3 49 71.4
CiPaw.13G119500 Carya illinoinensis HOM05D011602 ORTHO05D011791 5.1e-12 75.9 86 52.3
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 5.1e-12 75.9 47 72.3
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 6.6e-12 75.5 42 88.1
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.7e-12 75.1 49 71.4
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 2.5e-11 73.6 115 44.3
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 3.3e-11 73.2 35 100.0
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 5.6e-11 72.4 42 81.0
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 1.2e-10 71.2 91 49.5
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 1.6e-10 70.9 53 66.0
Phvul.002G090588 Phaseolus vulgaris HOM05D011602 ORTHO05D011791 2.8e-10 70.1 92 44.6
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 8.1e-10 68.6 108 44.4
LjContig00319g0018281 Lotus japonicus HOM05D011602 ORTHO05D011791 1.1e-09 68.2 60 58.3
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.1e-09 68.2 74 50.0
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 1.8e-09 67.4 57 63.2
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 2.4e-09 67.0 87 49.4
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 3.1e-09 66.6 37 81.1
Migut.H02256 Erythranthe guttata HOM05D011602 ORTHO05D011791 4.0e-09 66.2 75 48.0
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 6.9e-09 65.5 60 61.7
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-08 64.3 35 88.6
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.4e-08 63.2 41 73.2
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 9.9e-08 61.6 148 34.5
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 9.9e-08 61.6 42 73.8
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-07 61.2 94 44.7
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.3e-07 61.2 50 62.0
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.7e-07 60.8 79 41.8
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.9e-07 60.1 43 62.8
COL.COLO4_03250 Corchorus olitorius HOM05D011602 ORTHO05D011791 3.8e-07 59.7 29 93.1
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 4.9e-07 59.3 122 36.1
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 8.4e-07 58.5 42 66.7
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.4e-07 58.5 35 82.9
Gohir.A04G039331 Gossypium hirsutum HOM05D011602 ORTHO05D011791 1.1e-06 58.2 38 71.1
Gohir.A05G323756 Gossypium hirsutum HOM05D011602 ORTHO05D011791 1.1e-06 58.2 38 71.1
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 1.9e-06 57.4 66 50.0
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 3.2e-06 56.6 66 53.0
Migut.E00954 Erythranthe guttata HOM05D011602 ORTHO05D011791 3.2e-06 56.6 73 45.2
Gohir.D02G124566 Gossypium hirsutum HOM05D011602 ORTHO05D011791 3.2e-06 56.6 38 68.4
Nitab4.5_0011099g0080 Nicotiana tabacum HOM05D000963 ORTHO05D005131 3.2e-06 56.6 36 80.6
GSVIVG01010694001 Vitis vinifera HOM05D011602 ORTHO05D011791 7.1e-06 55.5 38 68.4


User provided reference genes

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