Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.2e-40 166.4 82 100.0
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.2e-40 166.4 82 100.0
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-39 166.0 82 98.8
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.5e-39 164.5 82 98.8
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.6e-38 160.2 82 96.3
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.9e-37 158.7 82 93.9
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.5e-37 158.3 82 93.9
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-36 155.6 82 96.3
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.6e-36 155.6 82 96.3
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 4.0e-35 151.0 81 87.7
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 5.3e-35 150.6 81 87.7
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 5.3e-35 150.6 79 89.9
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 9.0e-35 149.8 78 91.0
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.5e-34 149.1 81 86.4
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 2.6e-34 148.3 82 86.6
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 3.4e-34 147.9 82 86.6
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 4.4e-34 147.5 81 86.4
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.8e-34 147.1 77 88.3
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 7.6e-34 146.7 78 87.2
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 7.6e-34 146.7 78 87.2
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 7.6e-34 146.7 77 89.6
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.3e-33 146.0 82 91.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.3e-33 146.0 78 89.7
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.3e-33 146.0 81 82.7
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.7e-33 145.6 82 84.1
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.7e-33 145.6 82 84.1
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 2.2e-33 145.2 81 84.0
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.2e-33 145.2 81 85.2
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 2.2e-33 145.2 78 87.2
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 2.2e-33 145.2 77 88.3
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 2.2e-33 145.2 80 82.5
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 85.9
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 2.9e-33 144.8 77 87.0
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 2.9e-33 144.8 77 87.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 2.9e-33 144.8 81 84.0
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 87.2
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 3.8e-33 144.4 82 81.7
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 3.8e-33 144.4 78 88.5
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.8e-33 144.4 79 82.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 4.9e-33 144.1 81 84.0
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 4.9e-33 144.1 79 86.1
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 6.4e-33 143.7 81 82.7
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 6.4e-33 143.7 82 84.1
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 6.4e-33 143.7 77 87.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 6.4e-33 143.7 82 82.9
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 8.4e-33 143.3 77 88.3
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 8.4e-33 143.3 79 86.1
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 8.4e-33 143.3 82 82.9
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 85.9
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 84.6
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.4e-32 142.5 81 82.7
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 1.4e-32 142.5 80 85.0
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 1.4e-32 142.5 81 84.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 1.4e-32 142.5 81 82.7
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.4e-32 142.5 78 87.2
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.9e-32 142.1 81 81.5
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 84.6
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.9e-32 142.1 82 82.9
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 1.9e-32 142.1 81 81.5
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 2.4e-32 141.7 78 87.2
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 2.4e-32 141.7 80 82.5
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 2.4e-32 141.7 81 81.5
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 3.2e-32 141.4 79 82.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 7.1e-32 140.2 80 81.2
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 9.3e-32 139.8 81 81.5
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 9.3e-32 139.8 81 81.5
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 9.3e-32 139.8 75 86.7
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 9.3e-32 139.8 77 87.0
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.2e-31 139.4 79 84.8
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 83.1
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 84.8
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 86.1
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 86.1
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 79.7
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 2.1e-31 138.7 77 85.7
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.1e-31 138.7 79 84.8
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 2.1e-31 138.7 75 86.7
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 2.1e-31 138.7 81 79.0
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 6.0e-31 137.1 79 83.5
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 7.8e-31 136.7 77 84.4
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 83.5
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 83.5
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 83.5
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.0e-30 136.3 79 82.3
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.7e-30 135.6 86 76.7
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.7e-30 135.6 78 79.5
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-30 135.6 71 95.8
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 82.7
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.6e-30 133.7 73 95.9
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 8.7e-30 133.3 73 94.5
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.1e-29 132.9 78 78.2
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 92 71.7
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.5e-29 132.5 75 82.7
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.9e-29 132.1 75 82.7
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.9e-29 132.1 75 82.7
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 3.3e-29 131.3 75 81.3
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 3.3e-29 131.3 75 81.3
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 3.3e-29 131.3 75 81.3
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 5.6e-29 130.6 82 74.4
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.3e-28 129.4 71 90.1
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 2.1e-28 128.6 94 68.1
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.1e-28 126.7 61 95.1
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 8.1e-28 126.7 117 58.1
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 4.5e-26 120.9 66 86.4
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 2.9e-25 118.2 67 85.1
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.4e-24 115.9 67 80.6
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.9e-24 115.5 70 80.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.2e-24 114.4 67 82.1
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 5.4e-24 114.0 67 80.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.1e-23 112.1 68 79.4
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.6e-23 110.9 64 82.8
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 7.9e-23 110.2 72 77.8
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 7.9e-23 110.2 69 75.4
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 3.9e-22 107.8 74 64.9
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.5e-21 105.9 67 71.6
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.5e-21 105.1 66 75.8
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 3.3e-21 104.8 67 77.6
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 5.6e-21 104.0 50 86.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 2.8e-20 101.7 67 77.6
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 3.7e-20 101.3 77 59.7
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.8e-19 99.0 65 73.8
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.6e-18 95.1 61 72.1
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.6e-18 95.1 61 72.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 3.4e-18 94.7 50 80.0
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.7e-17 92.4 49 79.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.7e-17 92.4 49 79.6
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.4e-16 89.4 73 61.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 7.9e-15 83.6 49 81.6
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.0e-14 83.2 66 62.1
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 6.9e-11 70.5 36 75.0
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 6.9e-11 70.5 35 80.0
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.5e-10 69.3 44 86.4
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.0e-10 68.9 60 58.3
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.9e-09 65.1 38 71.1
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 7.1e-08 60.5 71 38.0
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 2.1e-07 58.9 39 61.5


User provided reference genes

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