Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.5e-30 135.6 70 100.0
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.3e-30 134.4 70 98.6
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.3e-30 134.4 70 98.6
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 5.3e-20 100.5 69 71.0
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 9.1e-20 99.8 68 79.4
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.2e-19 99.4 68 76.5
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.4e-19 97.8 68 73.5
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.4e-19 97.8 68 75.0
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 71.4
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 1.7e-18 95.5 70 65.7
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 1.7e-18 95.5 70 65.7
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 5.0e-18 94.0 70 68.6
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 68.6
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 68.6
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 6.5e-18 93.6 67 70.1
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.1e-17 92.8 70 67.1
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 1.4e-17 92.4 68 70.6
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 2.5e-17 91.7 70 68.6
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 4.2e-17 90.9 70 68.6
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 4.2e-17 90.9 70 67.1
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 7.2e-17 90.1 70 65.7
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 9.4e-17 89.7 70 65.7
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 9.4e-17 89.7 70 62.9
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 1.2e-16 89.4 68 67.6
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 1.2e-16 89.4 69 63.8
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 64.3
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 1.6e-16 89.0 70 64.3
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 2.1e-16 88.6 67 64.2
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 4.7e-16 87.4 70 62.9
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 6.1e-16 87.0 70 67.1
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 6.1e-16 87.0 68 61.8
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 1.4e-15 85.9 70 61.4
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 3.9e-15 84.3 70 58.6
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 5.2e-15 84.0 61 68.9
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 8.8e-15 83.2 68 61.8
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 8.8e-15 83.2 66 62.1
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 8.8e-15 83.2 67 59.7
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 1.1e-14 82.8 70 58.6
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 1.1e-14 82.8 61 67.2
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 1.1e-14 82.8 70 60.0
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 1.5e-14 82.4 64 60.9
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 2.0e-14 82.0 68 60.3
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.0e-14 82.0 67 65.7
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.6e-14 81.6 61 65.6
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.3e-14 81.3 68 61.8
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.4e-14 80.9 68 60.3
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 5.7e-14 80.5 70 55.7
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 7.4e-14 80.1 72 56.9
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 57.1
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 1.3e-13 79.3 70 58.6
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.3e-13 79.3 68 60.3
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.7e-13 79.0 65 61.5
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 3.7e-13 77.8 68 63.2
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 3.7e-13 77.8 53 69.8
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 6.3e-13 77.0 70 57.1
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 8.2e-13 76.6 67 53.7
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.1e-12 76.3 69 58.0
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 1.1e-12 76.3 67 56.7
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.1e-12 76.3 70 58.6
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 1.4e-12 75.9 70 55.7
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 1.4e-12 75.9 70 55.7
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.8e-12 75.5 70 55.7
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.1e-12 74.3 67 56.7
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 4.1e-12 74.3 70 57.1
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 4.1e-12 74.3 67 53.7
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 4.5e-11 70.9 68 55.9
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.0e-10 69.7 67 53.7
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.0e-10 69.7 71 54.9
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 1.0e-10 69.7 70 50.0
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 1.7e-10 68.9 74 56.8
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 2.9e-10 68.2 61 60.7
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.5e-10 67.0 71 53.5
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 1.1e-09 66.2 66 48.5
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 5.5e-09 63.9 65 49.2
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 1.2e-08 62.8 68 54.4
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 6.1e-08 60.5 74 44.6
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 6.1e-08 60.5 68 51.5


User provided reference genes

Program Settings