Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049579 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.8e-105 386.0 194 100.0
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 9.0e-102 373.6 193 97.4
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.6e-101 370.5 193 96.9
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-100 369.4 193 96.4
AL7G50350 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 2.7e-90 335.5 193 86.0
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 4.6e-90 334.7 193 85.5
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 4.6e-90 334.7 193 86.0
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 4.6e-90 334.7 193 86.0
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 4.6e-90 334.7 193 86.0
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 4.6e-90 334.7 193 86.0
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 4.6e-90 334.7 193 86.0
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-90 334.3 193 85.5
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-90 334.3 193 85.5
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-90 334.3 193 85.5
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-90 334.3 193 85.5
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-90 334.3 193 85.5
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-90 334.3 193 85.5
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 7.9e-90 334.0 193 83.9
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 7.9e-90 334.0 193 83.9
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 7.9e-90 334.0 193 83.9
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 7.9e-90 334.0 193 85.0
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 1.4e-89 333.2 193 86.0
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 1.4e-89 333.2 193 86.0
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.4e-89 333.2 193 86.0
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 1.4e-89 333.2 193 86.0
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 1.4e-89 333.2 193 86.0
MELO3C027417.2 Cucumis melo HOM05D001750 ORTHO05D001825 1.4e-89 333.2 193 86.5
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 2.3e-89 332.4 193 85.0
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 2.3e-89 332.4 193 85.0
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 2.3e-89 332.4 193 85.0
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 3.0e-89 332.0 193 85.5
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 3.9e-89 331.6 193 83.9
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.1e-89 331.3 193 82.9
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.1e-88 330.1 193 83.4
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 3.3e-88 328.6 193 82.9
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 9.7e-88 327.0 193 82.9
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 3.7e-87 325.1 193 81.9
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 3.7e-87 325.1 193 81.9
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 6.3e-87 324.3 193 81.3
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 6.9e-86 320.9 193 81.3
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 6.9e-86 320.9 193 81.3
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 1.2e-85 320.1 193 80.8
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 4.5e-85 318.2 193 79.8
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 7.7e-85 317.4 193 82.4
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 2.9e-84 315.5 193 80.3
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 5.5e-83 311.2 195 80.5
Gorai.013G022800 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.1e-82 309.3 180 88.9
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.6e-82 308.5 195 80.0
Solyc01g017090.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-79 298.9 193 74.1
Potri.011G084150 Populus trichocarpa HOM05D001750 ORTHO05D001825 1.0e-76 290.4 182 77.5
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 2.2e-76 289.3 193 77.2
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 4.5e-69 265.0 193 71.0
BolC6t36206H Brassica oleracea HOM05D001750 ORTHO05D001825 1.3e-60 236.9 156 80.1
Solyc03g013620.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.2e-56 223.8 150 75.3
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 6.3e-55 218.0 155 73.5
Gohir.D13G020450 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-54 217.2 119 93.3
Gorai.006G035300 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.9e-53 211.5 154 76.6
BolSC49t61138H Brassica oleracea HOM05D001750 ORTHO05D001825 1.0e-52 210.7 128 84.4
Eucgr.B00850 Eucalyptus grandis HOM05D001750 ORTHO05D001825 2.3e-52 209.5 193 60.1
PGSC0003DMG400020529 Solanum tuberosum HOM05D000729 ORTHO05D001063 2.5e-51 206.1 164 68.3
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 1.0e-49 200.7 165 66.7
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.2e-49 198.4 98 99.0
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.2e-49 198.4 98 99.0
Lalb_Chr07g0191711 Lupinus albus HOM05D001750 ORTHO05D001825 5.2e-49 198.4 124 79.8
Lalb_Chr16g0388561 Lupinus albus HOM05D001750 ORTHO05D001825 1.2e-45 187.2 143 70.6
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.4e-41 173.7 91 90.1
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 1.5e-40 170.2 112 73.2
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-39 167.2 155 60.6
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.4e-38 163.7 83 91.6
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 4.1e-38 162.2 189 49.2
Thhalv10024000m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 7.0e-38 161.4 126 65.1
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 7.0e-38 161.4 193 49.7
Psat0s3763g0040 Pisum sativum HOM05D001750 ORTHO05D001825 3.3e-35 152.5 79 88.6
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.6e-34 149.1 170 54.1
Solyc11g021195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.1e-27 127.5 106 65.1
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-26 124.0 59 98.3
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 1.6e-26 123.6 88 75.0
Nitab4.5_0007104g0110 Nicotiana tabacum HOM05D001750 ORTHO05D001825 4.7e-26 122.1 61 93.4
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 1.1e-25 120.9 59 94.9
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.8e-25 120.2 59 94.9
Solyc02g032320.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.3e-25 119.8 69 84.1
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 6.8e-25 118.2 64 85.9
HanXRQChr00c0718g0577001 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-24 114.8 109 59.6
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 1.3e-23 114.0 59 89.8
Hund04278 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.9e-23 112.8 126 50.0
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.9e-23 112.1 81 74.1
Eucgr.G01321 Eucalyptus grandis HOM05D000445 ORTHO05D000314 3.2e-22 109.4 104 59.6
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 6.0e-21 105.1 128 43.8
Solyc02g011720.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.0e-20 104.4 193 37.8
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.0e-20 102.8 193 37.3
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-19 100.9 193 36.8
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 7.3e-19 98.2 115 48.7
Gorai.008G266700 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.6e-18 95.9 48 93.8
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 6.2e-18 95.1 115 46.1
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 6.2e-18 95.1 98 51.0
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-17 93.6 110 46.4
BraSC48t46283Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-17 93.6 110 46.4
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-17 93.6 110 46.4
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.4e-17 93.2 128 42.2
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 4.0e-17 92.4 109 46.8
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 1.2e-16 90.9 101 47.5
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 2.6e-16 89.7 101 47.5
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 2.6e-16 89.7 101 47.5
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 4.4e-16 89.0 146 38.4
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 5.8e-16 88.6 98 48.0
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 5.8e-16 88.6 98 48.0
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.6e-16 88.2 109 45.9
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 1.3e-15 87.4 98 48.0
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 2.2e-15 86.7 98 48.0
CAN.G8.25 Capsicum annuum HOM05D001750 ORTHO05D001825 3.8e-15 85.9 60 75.0
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 6.4e-15 85.1 98 48.0
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.4e-14 84.0 118 43.2
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 1.9e-14 83.6 38 94.7
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 1.9e-14 83.6 38 94.7
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 1.9e-14 83.6 98 46.9
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-14 83.6 98 46.9
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-14 83.6 98 46.9
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-14 83.6 98 46.9
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-14 83.6 98 46.9
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 1.9e-14 83.6 38 94.7
Ciclev10013962m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Ciclev10013986m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Ciclev10014000m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Ciclev10018422m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Ciclev10027639m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Ciclev10027648m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Ciclev10030454m.g Citrus clementina HOM05D001750 ORTHO05D001825 9.3e-14 81.3 38 92.1
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 4.6e-13 79.0 82 50.0
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 6.0e-13 78.6 118 43.2
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-12 77.4 87 49.4
arahy.Tifrunner.gnm1.ann1.SXA5PB Arachis hypogaea HOM05D000445 ORTHO05D000314 5.1e-12 75.5 36 88.9
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 1.9e-11 73.6 38 86.8
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.5e-11 73.2 193 29.0
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.1e-10 70.1 33 90.9
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 2.1e-10 70.1 33 90.9
SHI35586 Sapria himalayana HOM05D001750 ORTHO05D001825 4.8e-10 68.9 115 40.0
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 6.2e-10 68.6 67 52.2
Thhalv10023164m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 1.1e-09 67.8 30 93.3
GSVIVG01004972001 Vitis vinifera HOM05D001750 ORTHO05D001825 1.1e-09 67.8 34 82.4
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 4.0e-09 65.9 56 57.1
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 4.0e-09 65.9 56 57.1
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.0e-09 65.9 56 57.1
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.0e-09 65.9 56 57.1
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.0e-09 65.9 56 57.1
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 9.0e-09 64.7 56 57.1
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 9.0e-09 64.7 56 55.4
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.2e-08 64.3 56 55.4
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 1.2e-08 64.3 56 55.4
HanXRQChr00c0328g0573591 Helianthus annuus HOM05D001750 ORTHO05D001825 4.5e-08 62.4 62 56.5
Lalb_Chr02g0153701 Lupinus albus HOM05D001750 ORTHO05D001825 9.9e-08 61.2 56 53.6
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 1.3e-07 60.8 40 67.5
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 6.4e-07 58.5 56 53.6
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.1e-06 57.8 33 75.8
Nitab4.5_0007979g0040 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.1e-06 57.8 40 62.5
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 7.1e-06 55.1 61 50.8
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 7.1e-06 55.1 148 31.1


User provided reference genes

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