Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-37 159.1 74 100.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.3e-37 159.1 74 100.0
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.9e-36 155.2 74 97.3
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.9e-36 155.2 74 97.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-20 100.5 50 94.0
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-20 100.5 50 94.0
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.6e-20 100.5 50 94.0
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.3e-19 99.4 50 92.0
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 3.6e-19 97.8 50 90.0
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-19 97.8 50 90.0
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 4.8e-19 97.4 50 88.0
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 6.2e-19 97.1 50 90.0
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 6.2e-19 97.1 50 90.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 6.2e-19 97.1 50 90.0
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 6.2e-19 97.1 56 78.6
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 6.2e-19 97.1 50 88.0
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.1e-18 96.3 50 86.0
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-18 95.9 49 89.8
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.8e-18 95.5 50 84.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.8e-18 95.5 49 91.8
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.4e-18 95.1 50 88.0
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.1e-18 94.7 50 86.0
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.9e-18 93.6 50 86.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 6.9e-18 93.6 50 86.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 6.9e-18 93.6 50 84.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 6.9e-18 93.6 50 84.0
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.9e-18 93.6 50 86.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 82.0
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 86.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 86.0
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 82.0
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 82.0
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 82.0
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 9.0e-18 93.2 50 82.0
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 9.0e-18 93.2 50 84.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.2e-17 92.8 50 84.0
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.5e-17 92.4 50 84.0
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.5e-17 92.4 50 84.0
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.5e-17 92.4 50 86.0
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.5e-17 92.4 49 85.7
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-17 92.4 49 85.7
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-17 92.4 49 85.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.5e-17 92.4 50 82.0
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.0e-17 92.0 50 86.0
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.0e-17 92.0 50 82.0
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.0e-17 92.0 50 82.0
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.0e-17 92.0 50 84.0
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.0e-17 92.0 50 84.0
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 2.6e-17 91.7 49 81.6
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 2.6e-17 91.7 49 85.7
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 2.6e-17 91.7 50 86.0
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 2.6e-17 91.7 50 80.0
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.6e-17 91.7 50 82.0
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 3.4e-17 91.3 50 82.0
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 3.4e-17 91.3 49 81.6
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.4e-17 91.3 50 84.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.4e-17 91.3 49 85.7
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 3.4e-17 91.3 50 82.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 4.5e-17 90.9 50 80.0
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 4.5e-17 90.9 50 80.0
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.5e-17 90.9 50 80.0
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 4.5e-17 90.9 50 80.0
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.8e-17 90.5 50 82.0
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.8e-17 90.5 50 82.0
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 5.8e-17 90.5 50 84.0
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 7.6e-17 90.1 50 82.0
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 7.6e-17 90.1 50 82.0
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 7.6e-17 90.1 50 80.0
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 7.6e-17 90.1 50 82.0
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 7.6e-17 90.1 50 82.0
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 7.6e-17 90.1 50 80.0
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 9.9e-17 89.7 49 81.6
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 9.9e-17 89.7 50 84.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.3e-16 89.4 50 82.0
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.3e-16 89.4 50 80.0
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.3e-16 89.4 50 78.0
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.7e-16 89.0 50 80.0
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.7e-16 89.0 50 80.0
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.7e-16 89.0 50 78.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.7e-16 89.0 53 77.4
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.7e-16 89.0 50 78.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.7e-16 89.0 50 78.0
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.7e-16 89.0 50 82.0
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 2.2e-16 88.6 50 80.0
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.2e-16 88.6 50 78.0
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.2e-16 88.6 50 78.0
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 2.2e-16 88.6 49 79.6
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.9e-16 88.2 50 80.0
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 2.9e-16 88.2 50 80.0
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.9e-16 88.2 50 76.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 2.9e-16 88.2 50 76.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 2.9e-16 88.2 50 80.0
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.9e-16 88.2 49 81.6
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 3.8e-16 87.8 50 76.0
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 3.8e-16 87.8 50 78.0
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 3.8e-16 87.8 50 78.0
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.8e-16 87.8 50 80.0
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.8e-16 87.8 53 75.5
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 4.9e-16 87.4 50 76.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 6.4e-16 87.0 50 74.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 6.4e-16 87.0 50 74.0
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 6.4e-16 87.0 50 76.0
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 6.4e-16 87.0 50 78.0
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 8.4e-16 86.7 50 78.0
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 8.4e-16 86.7 50 78.0
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 8.4e-16 86.7 50 78.0
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 8.4e-16 86.7 50 78.0
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.4e-15 85.9 50 78.0
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.9e-15 85.5 53 73.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.9e-15 85.5 50 76.0
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.4e-15 85.1 50 74.0
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.4e-15 85.1 50 74.0
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 2.4e-15 85.1 50 76.0
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 2.4e-15 85.1 50 72.0
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.2e-15 84.7 49 75.5
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 4.2e-15 84.3 50 74.0
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.1e-15 83.6 50 74.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 7.1e-15 83.6 50 72.0
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 9.3e-15 83.2 50 72.0
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 9.3e-15 83.2 50 76.0
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.2e-14 82.8 49 71.4
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.1e-14 82.0 50 68.0
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 4.6e-14 80.9 50 74.0
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 6.0e-14 80.5 50 72.0
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.3e-13 78.6 49 71.4
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.7e-13 77.0 50 76.0
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.9e-12 75.5 50 66.0
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 3.3e-12 74.7 52 61.5
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 7.4e-12 73.6 49 65.3
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.3e-11 72.8 54 64.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 6.2e-11 70.5 52 57.7
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.8e-10 68.9 46 65.2
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-09 66.2 47 68.1
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.0e-08 63.2 49 59.2
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.0e-08 63.2 49 59.2
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 6.5e-08 60.5 50 48.0
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 8.4e-08 60.1 34 76.5
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 8.4e-08 60.1 34 76.5
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 9.3e-07 56.6 31 80.6
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.1e-06 55.5 48 52.1
Gohir.A03G000009 Gossypium hirsutum HOM05D001778 ORTHO05D005872 2.7e-06 55.1 24 91.7
Gohir.A04G148300 Gossypium hirsutum HOM05D001778 ORTHO05D005872 2.7e-06 55.1 24 91.7
Duzib068G1340 Durio zibethinus HOM05D001778 ORTHO05D005872 3.5e-06 54.7 24 87.5
Eucgr.D02574 Eucalyptus grandis HOM05D001778 ORTHO05D005872 4.6e-06 54.3 24 83.3
Gorai.010G000100 Gossypium raimondii HOM05D001778 ORTHO05D005872 6.0e-06 53.9 36 69.4
Gorai.011G000100 Gossypium raimondii HOM05D010297 ORTHO05D015143 6.0e-06 53.9 36 69.4
COL.COLO4_16730 Corchorus olitorius HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
FvH4_5g24480 Fragaria vesca HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
FAN04G2563 Fragaria x ananassa HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
FAN08G2077 Fragaria x ananassa HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
FAN13G0610 Fragaria x ananassa HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
FAN13G1529 Fragaria x ananassa HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
FAN18G0495 Fragaria x ananassa HOM05D001778 ORTHO05D005872 7.9e-06 53.5 24 83.3
TPR.G16795 Trifolium pratense HOM05D001778 ORTHO05D005872 7.9e-06 53.5 54 48.1


User provided reference genes

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