Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.2e-134 481.9 265 100.0
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.3e-79 299.7 278 69.4
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.2e-77 291.6 255 73.3
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-66 256.9 255 67.5
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.3e-55 220.7 261 55.6
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 8.4e-50 201.4 267 53.9
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 6.0e-48 195.3 245 58.4
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.2e-43 181.0 262 53.8
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.1e-41 174.5 228 50.0
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.1e-40 170.2 225 47.1
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 4.6e-40 169.1 201 50.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.0e-40 168.7 210 51.4
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.1e-38 164.5 226 45.6
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 1.1e-38 164.5 194 56.2
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.9e-38 163.7 227 45.4
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.3e-38 162.5 232 54.3
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 5.6e-38 162.2 228 44.7
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.6e-38 162.2 227 44.9
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 9.6e-38 161.4 231 49.8
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 9.6e-38 161.4 224 47.8
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 9.6e-38 161.4 216 46.8
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-37 161.0 232 51.3
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.6e-37 160.6 212 50.0
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.1e-37 160.2 227 45.8
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 2.8e-37 159.8 205 46.3
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.7e-37 159.5 203 54.2
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.4e-36 156.8 209 55.0
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.0e-36 156.0 205 50.7
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 5.3e-36 155.6 247 49.8
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.4e-35 152.9 236 46.6
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.5e-35 152.5 207 46.9
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 4.5e-35 152.5 223 47.5
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 1.0e-34 151.4 253 44.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.7e-34 150.6 232 49.1
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.7e-34 150.6 206 48.5
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.7e-34 150.6 222 46.4
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.2e-34 150.2 248 43.5
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.9e-34 149.8 232 46.1
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.9e-34 149.8 238 47.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.9e-34 149.8 225 45.8
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.5e-34 148.7 216 53.7
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.9e-33 147.1 221 51.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.9e-33 147.1 204 46.1
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 5.5e-33 145.6 201 51.2
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 7.1e-33 145.2 211 50.2
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.6e-32 144.1 220 52.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.1e-32 143.7 205 48.8
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.1e-32 143.7 205 48.8
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 4.6e-32 142.5 205 50.2
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.8e-31 140.6 223 49.8
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 2.3e-31 140.2 161 59.6
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 2.3e-31 140.2 211 47.4
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 6.7e-31 138.7 205 43.9
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.1e-30 137.9 226 48.2
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.1e-30 137.9 227 50.2
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 2.5e-30 136.7 207 52.7
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.3e-30 136.3 148 63.5
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 7.4e-30 135.2 190 52.1
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 9.6e-30 134.8 226 46.9
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 9.6e-30 134.8 204 47.1
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.1e-29 133.7 188 49.5
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.1e-29 133.7 145 58.6
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.1e-29 133.7 221 48.9
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 3.7e-29 132.9 213 48.4
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.2e-29 132.1 241 47.3
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.3e-28 129.0 217 40.6
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 5.3e-28 129.0 230 43.0
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.2e-27 127.9 219 42.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 2.0e-27 127.1 153 49.7
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.6e-27 126.7 224 39.7
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 7.6e-27 125.2 216 49.5
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 2.2e-26 123.6 195 41.5
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 3.8e-26 122.9 192 42.7
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 5.0e-26 122.5 193 44.0
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.1e-25 121.3 204 49.0
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-25 120.9 234 41.5
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.4e-25 120.9 181 46.4
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 1.4e-25 120.9 137 53.3
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 2.5e-25 120.2 198 50.5
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 4.2e-25 119.4 122 55.7
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.5e-25 119.0 136 55.9
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 7.1e-25 118.6 129 58.9
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.2e-24 117.9 60 90.0
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.6e-24 117.5 173 44.5
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 3.5e-24 116.3 194 41.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 6.1e-24 115.5 192 42.7
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 7.9e-24 115.2 109 60.6
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.0e-23 114.8 204 38.2
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.3e-23 114.4 128 57.0
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.3e-23 114.4 195 39.5
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 3.0e-23 113.2 226 38.5
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 3.9e-23 112.8 207 41.5
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 6.7e-23 112.1 191 43.5
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 6.7e-23 112.1 130 53.1
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 8.7e-23 111.7 144 48.6
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.5e-22 110.9 105 57.1
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.3e-22 109.8 151 46.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 9.7e-22 108.2 201 48.3
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 9.7e-22 108.2 111 55.9
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 9.7e-22 108.2 129 51.2
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.8e-21 106.7 67 79.1
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.8e-21 106.7 167 44.9
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.8e-21 106.7 67 79.1
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.7e-21 106.3 185 43.8
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.4e-20 104.4 193 40.9
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 4.1e-20 102.8 189 41.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.3e-20 102.4 221 44.8
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 9.0e-20 101.7 110 51.8
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.2e-19 101.3 104 54.8
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.2e-19 101.3 126 53.2
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.2e-19 101.3 137 46.0
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 2.6e-19 100.1 109 52.3
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 2.6e-19 100.1 105 52.4
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 2.6e-19 100.1 137 46.0
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.4e-19 99.8 101 54.5
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 4.5e-19 99.4 112 50.9
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 4.5e-19 99.4 110 51.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 4.5e-19 99.4 107 52.3
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 7.7e-19 98.6 196 37.8
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.3e-18 97.8 133 45.1
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-18 97.4 109 53.2
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-18 97.4 109 50.5
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.7e-18 97.4 109 53.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.9e-18 96.7 66 69.7
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.9e-18 96.7 111 51.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.8e-18 96.3 103 52.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.0e-18 95.9 109 47.7
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 6.5e-18 95.5 197 37.6
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.1e-17 94.7 109 50.5
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.4e-17 94.4 110 48.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.9e-17 94.0 111 48.6
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.5e-17 93.6 132 57.6
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 3.2e-17 93.2 108 51.9
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 7.2e-17 92.0 147 41.5
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 9.4e-17 91.7 108 50.9
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.7e-16 90.1 108 50.0
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.7e-16 90.1 108 50.0
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.7e-16 90.1 108 50.0
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 2.7e-16 90.1 146 43.8
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.1e-16 89.0 107 46.7
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 7.9e-16 88.6 56 75.0
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.0e-15 88.2 185 40.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.4e-15 87.8 52 75.0
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 3.0e-15 86.7 101 53.5
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 3.0e-15 86.7 101 53.5
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 5.1e-15 85.9 101 50.5
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 5.1e-15 85.9 49 83.7
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 8.8e-15 85.1 96 47.9
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-14 84.0 39 92.3
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-14 84.0 39 92.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 2.0e-14 84.0 39 92.3
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.3e-14 83.2 55 69.1
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 7.4e-14 82.0 45 80.0
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.7e-14 81.6 75 54.7
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.7e-14 81.6 75 54.7
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.8e-13 80.1 111 46.8
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 8.2e-13 78.6 193 33.2
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 4.5e-11 72.8 43 79.1
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 7.7e-11 72.0 194 34.0
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.7e-10 70.9 42 71.4
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.8e-10 69.7 54 55.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-09 67.8 65 53.8
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.9e-09 67.4 39 71.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-08 64.3 37 70.3
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.8e-07 60.8 54 46.3
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 8.8e-07 58.5 128 34.4
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 2.0e-06 57.4 121 33.9
Lsat_1_v5_gn_6_10680 Lactuca sativa HOM05D000375 ORTHO05D000240 9.7e-06 55.1 56 41.1


User provided reference genes

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