Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049503 Gossypium hirsutum HOM05D003547 ORTHO05D004236 4.5e-97 357.8 170 100.0
Gohir.A07G000415 Gossypium hirsutum HOM05D003547 ORTHO05D004236 3.2e-95 351.7 169 98.2
Gohir.A01G000301 Gossypium hirsutum HOM05D003547 ORTHO05D004236 9.4e-95 350.1 169 98.2
Gorai.010G246400 Gossypium raimondii HOM05D003547 ORTHO05D004236 7.0e-74 280.8 136 96.3
Gohir.A06G201800 Gossypium hirsutum HOM05D003547 ORTHO05D004236 7.7e-73 277.3 136 94.9
Gohir.A10G000050 Gossypium hirsutum HOM05D003547 ORTHO05D004236 3.8e-72 275.0 131 99.2
Gohir.D06G220000 Gossypium hirsutum HOM05D003547 ORTHO05D004236 8.5e-72 273.9 136 95.6
Duzib160G0138 Durio zibethinus HOM05D003547 ORTHO05D004236 9.5e-63 243.8 136 83.1
Duzib192G0273 Durio zibethinus HOM05D003547 ORTHO05D004236 2.7e-62 242.3 136 82.4
MD04G1067300 Malus domestica HOM05D003547 ORTHO05D004236 1.0e-61 240.4 136 79.4
CANSAT54G2270 Cannabis sativa HOM05D003547 ORTHO05D004236 3.4e-60 235.3 136 80.1
MD06G1073000 Malus domestica HOM05D003547 ORTHO05D004236 5.7e-60 234.6 136 77.9
Thecc.06G017300 Theobroma cacao HOM05D003547 ORTHO05D004236 1.3e-59 233.4 136 81.6
GSVIVG01019857001 Vitis vinifera HOM05D003547 ORTHO05D004236 1.3e-59 233.4 136 77.9
Duzib160G0880 Durio zibethinus HOM05D003547 ORTHO05D004236 1.7e-59 233.0 136 81.6
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 2.8e-59 232.3 136 78.7
CiPaw.11G141000 Carya illinoinensis HOM05D003547 ORTHO05D004236 3.7e-59 231.9 136 77.9
Prupe.5G091400 Prunus persica HOM05D003547 ORTHO05D004236 3.7e-59 231.9 136 76.5
Cfa012105 Carpinus fangiana HOM05D003547 ORTHO05D004236 6.3e-59 231.1 136 79.4
PGR042G3585 Punica granatum HOM05D003547 ORTHO05D004236 8.3e-59 230.7 136 75.0
Manes.02G027500 Manihot esculenta HOM05D003547 ORTHO05D004236 1.4e-58 229.9 136 77.2
Haze_08946 Corylus avellana HOM05D003547 ORTHO05D004236 1.8e-58 229.6 136 79.4
Gohir.A03G086500 Gossypium hirsutum HOM05D003547 ORTHO05D004236 1.8e-58 229.6 136 80.1
Manes.01G066800 Manihot esculenta HOM05D003547 ORTHO05D004236 1.8e-58 229.6 136 79.4
COL.COLO4_31135 Corchorus olitorius HOM05D003547 ORTHO05D004236 2.4e-58 229.2 136 78.7
Gohir.D02G105800 Gossypium hirsutum HOM05D003547 ORTHO05D004236 2.4e-58 229.2 136 79.4
Gorai.005G120200 Gossypium raimondii HOM05D003547 ORTHO05D004236 2.4e-58 229.2 136 79.4
Eucgr.E00532 Eucalyptus grandis HOM05D003547 ORTHO05D004236 3.1e-58 228.8 136 75.0
QL12p017284 Quercus lobata HOM05D003547 ORTHO05D004236 3.1e-58 228.8 135 76.3
RcHm_v2.0_Chr7g0199181 Rosa chinensis HOM05D003547 ORTHO05D004236 9.2e-58 227.3 136 75.7
arahy.Tifrunner.gnm1.ann1.HG54ZH Arachis hypogaea HOM05D003547 ORTHO05D004236 1.6e-57 226.5 136 74.3
FAN04G0150 Fragaria x ananassa HOM05D003547 ORTHO05D004236 2.7e-57 225.7 136 75.0
FAN13G0583 Fragaria x ananassa HOM05D003547 ORTHO05D004236 3.5e-57 225.3 136 75.0
FAN08G0461 Fragaria x ananassa HOM05D003547 ORTHO05D004236 7.7e-57 224.2 136 75.0
TAR629G0482 Trochodendron aralioides HOM05D003547 ORTHO05D004236 7.7e-57 224.2 136 75.0
VMungo1215G1357 Vigna mungo HOM05D003547 ORTHO05D004236 7.7e-57 224.2 136 75.0
arahy.Tifrunner.gnm1.ann1.CHY9ZA Arachis hypogaea HOM05D003547 ORTHO05D004236 1.0e-56 223.8 136 73.5
Glyma.17G131500 Glycine max HOM05D003547 ORTHO05D004236 1.3e-56 223.4 136 75.7
Lj8A238G58 Lonicera japonica HOM05D003547 ORTHO05D004236 1.3e-56 223.4 138 73.9
Phvul.003G212400 Phaseolus vulgaris HOM05D003547 ORTHO05D004236 1.3e-56 223.4 136 75.0
vmacro22743 Vaccinium macrocarpon HOM05D003547 ORTHO05D004236 1.3e-56 223.4 136 72.8
Cc08_g14010 Coffea canephora HOM05D003547 ORTHO05D004236 1.7e-56 223.0 136 75.7
FvH4_5g01510 Fragaria vesca HOM05D003547 ORTHO05D004236 2.9e-56 222.2 136 73.5
FAN18G3487 Fragaria x ananassa HOM05D003547 ORTHO05D004236 2.9e-56 222.2 136 73.5
Cpa.g.sc29.7 Carica papaya HOM05D003547 ORTHO05D004236 3.8e-56 221.9 136 75.0
arahy.Tifrunner.gnm1.ann1.M5YJKY Arachis hypogaea HOM05D003547 ORTHO05D004236 6.6e-56 221.1 136 73.5
arahy.Tifrunner.gnm1.ann1.Z37SN9 Arachis hypogaea HOM05D003547 ORTHO05D004236 6.6e-56 221.1 136 73.5
Migut.A00924 Erythranthe guttata HOM05D003547 ORTHO05D004236 6.6e-56 221.1 136 75.0
Lalb_Chr05g0225061 Lupinus albus HOM05D003547 ORTHO05D004236 6.6e-56 221.1 136 72.8
Aqoxy7G00440 Aquilegia oxysepala HOM05D003547 ORTHO05D004236 8.6e-56 220.7 136 75.7
Lj4g0016141 Lotus japonicus HOM05D003547 ORTHO05D004236 1.1e-55 220.3 136 73.5
SalBow6G6756 Salvia bowleyana HOM05D003547 ORTHO05D004236 1.5e-55 219.9 136 75.7
THA.LOC104823570 Tarenaya hassleriana HOM05D003547 ORTHO05D004236 1.5e-55 219.9 136 75.7
Glyma.05G049500 Glycine max HOM05D003547 ORTHO05D004236 1.9e-55 219.5 136 75.0
Atru.chr9.1544 Acer truncatum HOM05D003547 ORTHO05D004236 2.5e-55 219.2 136 74.3
THA.LOC104818214 Tarenaya hassleriana HOM05D003547 ORTHO05D004236 2.5e-55 219.2 136 73.5
DCAR_024220 Daucus carota HOM05D003547 ORTHO05D004236 3.3e-55 218.8 136 72.8
MBI04_g02076_MAGBIO Magnolia biondii HOM05D003547 ORTHO05D004236 3.3e-55 218.8 134 74.6
SalBow1G4609 Salvia bowleyana HOM05D003547 ORTHO05D004236 3.3e-55 218.8 136 73.5
PGSC0003DMG400022761 Solanum tuberosum HOM05D003547 ORTHO05D004236 3.3e-55 218.8 136 74.3
Peaxi162Scf00714g00618 Petunia axillaris HOM05D003547 ORTHO05D004236 4.3e-55 218.4 136 75.0
TAR162G0002 Trochodendron aralioides HOM05D003547 ORTHO05D004236 5.6e-55 218.0 136 74.3
Ciclev10020062m.g Citrus clementina HOM05D003547 ORTHO05D004236 7.3e-55 217.6 136 73.5
Peaxi162Scf00102g01431 Petunia axillaris HOM05D003547 ORTHO05D004236 7.3e-55 217.6 136 74.3
CSS0039885 Camellia sinensis var. sinensis HOM05D003547 ORTHO05D004236 9.5e-55 217.2 136 72.1
Nitab4.5_0002886g0010 Nicotiana tabacum HOM05D003547 ORTHO05D004236 9.5e-55 217.2 136 74.3
Potri.001G110100 Populus trichocarpa HOM05D003547 ORTHO05D004236 9.5e-55 217.2 136 72.8
HanXRQChr13g0416721 Helianthus annuus HOM05D003547 ORTHO05D004236 1.2e-54 216.9 136 72.8
Oeu062362.1 Olea europaea HOM05D003547 ORTHO05D004236 1.2e-54 216.9 135 72.6
MSTRG.25577 Avicennia marina HOM05D003547 ORTHO05D004236 1.6e-54 216.5 136 71.3
Nitab4.5_0001200g0130 Nicotiana tabacum HOM05D003547 ORTHO05D004236 2.1e-54 216.1 136 73.5
TPR.G19221 Trifolium pratense HOM05D003547 ORTHO05D004236 2.1e-54 216.1 136 72.8
ClCG00G000880 Citrullus lanatus HOM05D003547 ORTHO05D004236 2.8e-54 215.7 136 69.1
ClCG10G003720 Citrullus lanatus HOM05D003547 ORTHO05D004236 2.8e-54 215.7 136 69.1
MELO3C014054.2 Cucumis melo HOM05D003547 ORTHO05D004236 2.8e-54 215.7 136 69.9
CsaV3_3G003720 Cucumis sativus L. HOM05D003547 ORTHO05D004236 2.8e-54 215.7 136 69.9
Dinv37691 Davidia involucrata HOM05D003547 ORTHO05D004236 2.8e-54 215.7 136 72.8
Sopen08g028680 Solanum pennellii HOM05D003547 ORTHO05D004236 2.8e-54 215.7 136 73.5
Thhalv10007564m.g Eutrema salsugineum HOM05D003547 ORTHO05D004236 3.6e-54 215.3 136 71.3
Psat4g067160 Pisum sativum HOM05D003547 ORTHO05D004236 3.6e-54 215.3 137 73.0
SGA_v2.0_scaffold286G47093 Striga asiatica HOM05D003547 ORTHO05D004236 4.7e-54 214.9 136 72.8
Lsat_1_v5_gn_6_7220 Lactuca sativa HOM05D003547 ORTHO05D004236 6.1e-54 214.5 136 73.5
Carub.0001s1233 Capsella rubella HOM05D003547 ORTHO05D004236 8.0e-54 214.2 136 72.1
Medtr4g102750 Medicago truncatula HOM05D003547 ORTHO05D004236 8.0e-54 214.2 136 70.6
Sed0008694 Sechium edule HOM05D003547 ORTHO05D004236 8.0e-54 214.2 136 69.1
Sed0023323 Sechium edule HOM05D003547 ORTHO05D004236 8.0e-54 214.2 136 69.1
TWI15G0596 Tripterygium wilfordii HOM05D003547 ORTHO05D004236 8.0e-54 214.2 136 72.1
AL1G24100 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 1.0e-53 213.8 136 72.1
Potri.003G121700 Populus trichocarpa HOM05D003547 ORTHO05D004236 1.0e-53 213.8 136 70.6
Aa31LG2G540 Aethionema arabicum HOM05D003547 ORTHO05D004236 1.4e-53 213.4 136 71.3
CAN.G981.33 Capsicum annuum HOM05D003547 ORTHO05D004236 1.4e-53 213.4 136 72.1
AT1G12640 Arabidopsis thaliana HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 71.3
BcaC05g25169 Brassica carinata HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 70.6
C05p10630 Brassica napus HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 70.6
BolC5t29805H Brassica oleracea HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 70.6
Ca_20247_v3 Cicer arietinum L. HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 72.1
Lj2A195T69 Lonicera japonica HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 71.3
Solyc08g007860.4 Solanum lycopersicum HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 74.3
Sopen08g003790 Solanum pennellii HOM05D003547 ORTHO05D004236 1.8e-53 213.0 136 74.3
Actinidia14524 Actinidia chinensis HOM05D003547 ORTHO05D004236 2.3e-53 212.6 136 72.1
AL1G23990 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 2.3e-53 212.6 136 71.3
Sabra01G0083300 Salix brachista HOM05D003547 ORTHO05D004236 2.3e-53 212.6 136 71.3
SGA_v2.0_scaffold343G49466 Striga asiatica HOM05D003547 ORTHO05D004236 2.3e-53 212.6 135 73.3
arahy.Tifrunner.gnm1.ann1.Q80APQ Arachis hypogaea HOM05D003547 ORTHO05D004236 3.0e-53 212.2 135 71.1
Actinidia05228 Actinidia chinensis HOM05D003547 ORTHO05D004236 4.0e-53 211.8 136 70.6
DCAR_004677 Daucus carota HOM05D003547 ORTHO05D004236 4.0e-53 211.8 135 70.4
Zm00001eb250480 Zea mays HOM05D003547 ORTHO05D004236 4.0e-53 211.8 157 65.0
HanXRQChr02g0048801 Helianthus annuus HOM05D003547 ORTHO05D004236 5.2e-53 211.5 136 71.3
Nitab4.5_0002234g0080 Nicotiana tabacum HOM05D003547 ORTHO05D004236 5.2e-53 211.5 136 74.3
Solyc08g080340.3 Solanum lycopersicum HOM05D003547 ORTHO05D004236 6.8e-53 211.1 136 72.1
Sabra03G0085900 Salix brachista HOM05D003547 ORTHO05D004236 8.9e-53 210.7 136 69.9
ECA233G1009 Erigeron canadensis HOM05D003547 ORTHO05D004236 1.5e-52 209.9 136 69.9
Sp1g11230 Schrenkiella parvula HOM05D003547 ORTHO05D004236 1.5e-52 209.9 136 69.9
Lalb_Chr09g0321171 Lupinus albus HOM05D003547 ORTHO05D004236 2.0e-52 209.5 137 70.8
PGSC0003DMG400012528 Solanum tuberosum HOM05D003547 ORTHO05D004236 2.6e-52 209.1 136 73.5
TWI60G0357 Tripterygium wilfordii HOM05D003547 ORTHO05D004236 2.6e-52 209.1 139 69.8
BcaB07g31380 Brassica carinata HOM05D003547 ORTHO05D004236 3.4e-52 208.8 137 70.8
A06p09030 Brassica napus HOM05D003547 ORTHO05D004236 4.4e-52 208.4 137 70.1
BraA06t24092Z Brassica rapa HOM05D003547 ORTHO05D004236 4.4e-52 208.4 137 70.1
MSTRG.1894 Avicennia marina HOM05D003547 ORTHO05D004236 5.7e-52 208.0 136 70.6
Carub.0002s0195 Capsella rubella HOM05D003547 ORTHO05D004236 5.7e-52 208.0 136 69.1
CARHR012930 Cardamine hirsuta HOM05D003547 ORTHO05D004236 9.8e-52 207.2 136 69.9
Thhalv10023446m.g Eutrema salsugineum HOM05D003547 ORTHO05D004236 9.8e-52 207.2 137 70.8
Lsat_1_v5_gn_6_87800 Lactuca sativa HOM05D003547 ORTHO05D004236 9.8e-52 207.2 136 71.3
AL2G12540 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 1.7e-51 206.5 136 69.1
Nitab4.5_0002853g0090 Nicotiana tabacum HOM05D003547 ORTHO05D004236 1.7e-51 206.5 136 72.8
Sp2g01520 Schrenkiella parvula HOM05D003547 ORTHO05D004236 2.9e-51 205.7 137 70.1
Sc13g0008440 Simmondsia chinensis HOM05D003547 ORTHO05D004236 2.9e-51 205.7 136 69.9
Ah.13g068290 Amaranthus hybridus HOM05D003547 ORTHO05D004236 8.3e-51 204.1 136 70.6
Migut.E01295 Erythranthe guttata HOM05D003547 ORTHO05D004236 8.3e-51 204.1 136 69.9
BcaC04g22467 Brassica carinata HOM05D003547 ORTHO05D004236 1.4e-50 203.4 138 70.3
A09p15710 Brassica napus HOM05D003547 ORTHO05D004236 1.4e-50 203.4 138 70.3
C09p18950 Brassica napus HOM05D003547 ORTHO05D004236 1.4e-50 203.4 138 70.3
BolC9t54799H Brassica oleracea HOM05D003547 ORTHO05D004236 1.4e-50 203.4 138 70.3
BraA09t37214Z Brassica rapa HOM05D003547 ORTHO05D004236 1.4e-50 203.4 138 70.3
Nn1g01365 Nelumbo nucifera HOM05D003547 ORTHO05D004236 1.4e-50 203.4 136 66.9
AT1G63050 Arabidopsis thaliana HOM05D003547 ORTHO05D004236 1.8e-50 203.0 136 68.4
Os02g0676000 Oryza sativa ssp. japonica HOM05D003547 ORTHO05D004236 1.8e-50 203.0 136 69.1
ATR0757G074 Amborella trichopoda HOM05D003547 ORTHO05D004236 2.4e-50 202.6 136 66.9
BcaC05g25124 Brassica carinata HOM05D003547 ORTHO05D004236 4.1e-50 201.8 137 69.3
CARHR048570 Cardamine hirsuta HOM05D003547 ORTHO05D004236 4.1e-50 201.8 137 68.6
PSO782G0307 Papaver somniferum HOM05D003547 ORTHO05D004236 5.4e-50 201.4 136 69.9
HPP92_002471 Vanilla planifolia HOM05D003547 ORTHO05D004236 9.2e-50 200.7 136 68.4
DCAR_008422 Daucus carota HOM05D003547 ORTHO05D004236 1.2e-49 200.3 136 68.4
Hma1.2p1_0514F.1_g170080 Hydrangea macrophylla HOM05D003547 ORTHO05D004236 1.2e-49 200.3 129 72.1
PSO478G4332 Papaver somniferum HOM05D003547 ORTHO05D004236 4.6e-49 198.4 136 68.4
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.0e-48 197.2 130 70.8
SEGI_17211 Sequoiadendron giganteum HOM05D003547 ORTHO05D004236 1.0e-48 197.2 137 67.2
ClCG00G003630 Citrullus lanatus HOM05D003547 ORTHO05D004236 3.0e-48 195.7 136 64.7
EL10Ac3g05697 Beta vulgaris HOM05D003547 ORTHO05D004236 3.9e-48 195.3 136 66.9
AUR62021233 Chenopodium quinoa HOM05D003547 ORTHO05D004236 5.0e-48 194.9 136 66.9
PGSC0003DMG400004256 Solanum tuberosum HOM05D003547 ORTHO05D004236 8.6e-48 194.1 137 67.2
arahy.Tifrunner.gnm1.ann1.Y3YVB2 Arachis hypogaea HOM05D003547 ORTHO05D004236 4.3e-47 191.8 157 59.2
Hund11772 Selenicereus undatus HOM05D003547 ORTHO05D004236 5.6e-47 191.4 136 64.7
Sc07g0009550 Simmondsia chinensis HOM05D003547 ORTHO05D004236 7.3e-47 191.0 136 68.4
AUR62016028 Chenopodium quinoa HOM05D003547 ORTHO05D004236 2.1e-46 189.5 136 65.4
Solyc12g056420.2 Solanum lycopersicum HOM05D003547 ORTHO05D004236 6.2e-46 188.0 137 65.0
Sopen12g029010 Solanum pennellii HOM05D003547 ORTHO05D004236 1.0e-45 187.2 137 65.0
unitig_22.g5475 Utricularia gibba HOM05D003547 ORTHO05D004236 1.0e-45 187.2 136 64.0
CAN.G26.30 Capsicum annuum HOM05D003547 ORTHO05D004236 2.3e-45 186.0 137 62.8
Ah.07g208970 Amaranthus hybridus HOM05D003547 ORTHO05D004236 8.9e-45 184.1 129 67.4
ECA246G0929 Erigeron canadensis HOM05D003547 ORTHO05D004236 2.0e-44 183.0 136 62.5
Pp3c6_27300 Physcomitrium patens HOM05D003547 ORTHO05D004236 6.4e-43 177.9 139 59.7
HanXRQChr17g0533761 Helianthus annuus HOM05D003547 ORTHO05D004236 9.2e-42 174.1 136 59.6
MBI04_g45341_MAGBIO Magnolia biondii HOM05D003547 ORTHO05D004236 1.0e-40 170.6 117 65.0
arahy.Tifrunner.gnm1.ann1.BX3ZCH Arachis hypogaea HOM05D003547 ORTHO05D004236 1.2e-38 163.7 138 60.1
Mapoly0004s0125 Marchantia polymorpha HOM05D003547 ORTHO05D004236 5.8e-36 154.8 136 51.5
Pp3c11_9320 Physcomitrium patens HOM05D003547 ORTHO05D004236 1.4e-34 150.2 139 49.6
AagrBONN_evm.TU.Sc2ySwM_117.4088 Anthoceros agrestis HOM05D003547 ORTHO05D004236 2.4e-34 149.4 135 53.3
TPR.G40545 Trifolium pratense HOM05D003547 ORTHO05D004236 2.1e-30 136.3 75 82.7
Pp3c7_18310 Physcomitrium patens HOM05D003547 ORTHO05D004236 3.6e-30 135.6 139 47.5
Pp3c7_18311 Physcomitrium patens HOM05D003547 ORTHO05D004236 3.6e-30 135.6 139 47.5
BcaC02g10256 Brassica carinata HOM05D003547 ORTHO05D004236 1.6e-25 120.2 75 77.3
C04p31030 Brassica napus HOM05D003547 ORTHO05D000024 1.6e-25 120.2 75 77.3
BolC3t17616H Brassica oleracea HOM05D003547 ORTHO05D042659 2.1e-25 119.8 102 57.8
C03p53560 Brassica napus HOM05D003547 ORTHO05D042659 1.3e-24 117.1 78 67.9
CBR_g78882 Chara braunii HOM05D003547 ORTHO05D004236 3.6e-22 109.0 151 39.1
Lsat_1_v5_gn_3_5440 Lactuca sativa HOM05D003547 ORTHO05D004236 4.5e-12 75.5 63 61.9
arahy.Tifrunner.gnm1.ann1.LLQV15 Arachis hypogaea HOM05D003547 ORTHO05D004236 5.8e-12 75.1 67 58.2
PRCOL_00002600 Prasinoderma coloniale HOM05D003547 ORTHO05D004236 2.3e-08 63.2 128 28.9
Cre12.g537641 Chlamydomonas reinhardtii HOM05D003547 ORTHO05D004236 2.5e-07 59.7 161 29.2
Dinv39008 Davidia involucrata HOM05D003547 ORTHO05D004236 7.4e-07 58.2 134 31.3
MCO09G760 Micromonas commoda HOM05D003547 ORTHO05D004236 9.6e-07 57.8 76 40.8
Cfa024599 Carpinus fangiana HOM05D003547 ORTHO05D004236 3.7e-06 55.8 92 28.3


User provided reference genes

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