Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049437 Gossypium hirsutum HOM05D004980 ORTHO05D006505 1.6e-160 569.3 281 100.0
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 4.3e-153 544.7 270 100.0
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 1.4e-148 529.6 270 96.7
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 9.2e-148 526.9 270 96.3
Duzib268G1663 Durio zibethinus HOM05D004980 ORTHO05D006505 1.7e-138 496.1 271 90.4
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 2.8e-136 488.8 271 90.0
COL.COLO4_09708 Corchorus olitorius HOM05D004980 ORTHO05D006505 2.2e-133 479.2 271 87.1
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 8.4e-125 450.7 272 81.2
Atru.chr2.3504 Acer truncatum HOM05D004980 ORTHO05D006505 1.9e-124 449.5 270 81.1
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 1.9e-124 449.5 273 79.9
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 7.1e-124 447.6 270 79.3
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 1.2e-123 446.8 273 78.4
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 3.5e-123 445.3 273 79.1
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 4.6e-123 444.9 273 79.9
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 2.3e-122 442.6 273 76.9
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 3.0e-122 442.2 274 78.5
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 1.9e-121 439.5 270 77.0
QL08p007075 Quercus lobata HOM05D004980 ORTHO05D006505 1.9e-121 439.5 269 79.9
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 2.5e-121 439.1 274 78.1
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 3.3e-121 438.7 274 80.3
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 4.3e-121 438.3 273 78.0
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 4.3e-121 438.3 273 77.7
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 5.6e-121 438.0 273 80.2
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 5.6e-121 438.0 273 78.8
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 2.1e-120 436.0 273 76.6
Oeu057850.1 Olea europaea HOM05D004980 ORTHO05D006505 2.8e-120 435.6 273 76.6
ECA246G3869 Erigeron canadensis HOM05D004980 ORTHO05D006505 1.1e-119 433.7 273 77.7
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 1.1e-119 433.7 270 78.1
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 1.4e-119 433.3 273 77.3
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 1.8e-119 433.0 276 77.2
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 2.4e-119 432.6 270 78.1
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 3.1e-119 432.2 270 77.8
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 3.1e-119 432.2 270 77.8
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 5.3e-119 431.4 271 78.2
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 5.3e-119 431.4 274 75.9
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 6.9e-119 431.0 272 76.1
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 9.0e-119 430.6 272 75.7
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 9.0e-119 430.6 273 78.4
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.2e-118 430.3 273 76.6
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 1.2e-118 430.3 273 78.4
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.5e-118 429.9 270 77.4
Sed0018379 Sechium edule HOM05D004980 ORTHO05D006505 1.5e-118 429.9 274 76.3
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 1.5e-118 429.9 274 76.3
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 1.5e-118 429.9 273 76.2
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.0e-118 429.5 270 77.4
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 4.5e-118 428.3 277 75.1
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 5.8e-118 427.9 270 76.7
PSO541G1224 Papaver somniferum HOM05D004980 ORTHO05D006505 1.7e-117 426.4 273 72.5
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.2e-117 426.0 270 77.4
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 2.2e-117 426.0 273 75.8
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 2.9e-117 425.6 271 78.6
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 6.5e-117 424.5 273 75.1
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 6.5e-117 424.5 273 77.3
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 8.4e-117 424.1 273 72.2
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 1.4e-116 423.3 273 76.2
Lsat_1_v5_gn_5_3221 Lactuca sativa HOM05D004980 ORTHO05D006505 1.4e-116 423.3 270 76.7
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 1.4e-116 423.3 270 75.9
MSTRG.17982 Avicennia marina HOM05D004980 ORTHO05D006505 3.2e-116 422.2 273 75.5
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 3.2e-116 422.2 273 75.1
Glyma.14G019100 Glycine max HOM05D004980 ORTHO05D006505 3.2e-116 422.2 273 75.5
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 3.2e-116 422.2 273 75.8
SGA_v2.0_scaffold95G28711 Striga asiatica HOM05D004980 ORTHO05D006505 3.2e-116 422.2 275 76.4
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 2.1e-115 419.5 284 72.9
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 2.7e-115 419.1 273 74.4
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 7.9e-115 417.5 270 72.6
EL10Ac4g07745 Beta vulgaris HOM05D004980 ORTHO05D006505 1.0e-114 417.2 270 73.0
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 1.3e-114 416.8 274 75.5
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 1.3e-114 416.8 270 74.4
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 3.0e-114 415.6 274 74.5
Thhalv10013463m.g Eutrema salsugineum HOM05D004980 ORTHO05D006505 3.0e-114 415.6 274 74.5
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 3.0e-114 415.6 274 72.6
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 3.0e-114 415.6 274 74.8
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 5.1e-114 414.8 270 73.0
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 8.7e-114 414.1 274 74.5
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 1.1e-113 413.7 281 72.6
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 1.1e-113 413.7 270 73.3
SGA_v2.0_scaffold77G25279 Striga asiatica HOM05D004980 ORTHO05D006505 1.1e-113 413.7 298 71.1
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 1.5e-113 413.3 274 74.8
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 3.3e-113 412.1 274 74.8
CAN.G337.68 Capsicum annuum HOM05D004980 ORTHO05D006505 3.3e-113 412.1 273 73.6
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 7.4e-113 411.0 270 71.9
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 9.6e-113 410.6 274 74.1
BolC2t07741H Brassica oleracea HOM05D004980 ORTHO05D006505 9.6e-113 410.6 274 74.5
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 1.3e-112 410.2 273 73.3
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 2.1e-112 409.5 274 74.1
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 2.1e-112 409.5 270 71.5
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 2.8e-112 409.1 270 72.2
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 2.8e-112 409.1 274 73.4
MBI03_g18682_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D006505 6.3e-112 407.9 265 75.8
C02p16390 Brassica napus HOM05D004980 ORTHO05D006505 8.2e-112 407.5 274 74.1
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 1.1e-111 407.1 274 73.7
Hund23210 Selenicereus undatus HOM05D004980 ORTHO05D006505 1.4e-111 406.8 270 71.9
Aa31LG3G11110 Aethionema arabicum HOM05D004980 ORTHO05D006505 2.4e-111 406.0 274 72.3
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 2.4e-111 406.0 270 72.6
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 3.1e-111 405.6 305 66.2
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 4.1e-111 405.2 274 73.0
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 4.1e-111 405.2 277 70.0
ATR1128G016 Amborella trichopoda HOM05D004980 ORTHO05D006505 5.3e-111 404.8 273 72.5
BcaC03g14262 Brassica carinata HOM05D004980 ORTHO05D006505 6.9e-111 404.4 274 74.1
unitig_61.g26342 Utricularia gibba HOM05D004980 ORTHO05D006505 9.0e-111 404.1 270 71.1
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 1.2e-110 403.7 295 69.8
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 1.5e-110 403.3 274 72.3
THA.LOC104813432 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 1.3e-109 400.2 274 71.9
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 3.8e-109 398.7 274 71.5
SalBow3G0070 Salvia bowleyana HOM05D004980 ORTHO05D006505 6.1e-107 391.3 275 68.4
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 9.7e-105 384.0 275 70.2
HPP92_015323 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.1e-103 380.6 271 69.4
HPP92_015364 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.1e-103 380.6 271 69.4
Actinidia32274 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.8e-98 363.2 219 80.8
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 1.8e-98 363.2 271 64.9
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 2.3e-98 362.8 271 64.9
SEGI_15101 Sequoiadendron giganteum HOM05D004980 ORTHO05D006505 2.5e-92 342.8 290 59.0
CSS0031886 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 7.0e-87 324.7 240 67.9
Os02g0804600 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 8.5e-85 317.8 273 54.9
Mapoly0013s0163 Marchantia polymorpha HOM05D004980 ORTHO05D006505 3.3e-81 305.8 297 54.2
Pp3c19_6530 Physcomitrium patens HOM05D004980 ORTHO05D006505 4.8e-80 302.0 269 56.1
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 3.1e-79 299.3 268 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2510 Anthoceros agrestis HOM05D004980 ORTHO05D006505 7.0e-79 298.1 279 53.4
Lj1A365T17 Lonicera japonica HOM05D004980 ORTHO05D006505 1.2e-78 297.4 215 69.8
Actinidia14067 Actinidia chinensis HOM05D004980 ORTHO05D006505 2.9e-77 292.7 263 59.3
Hma1.2p1_1332F.1_g276080 Hydrangea macrophylla HOM05D004980 ORTHO05D006505 9.4e-76 287.7 278 56.5
SMO235G0013 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 1.2e-75 287.3 270 53.0
SMO347G0194 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 8.0e-75 284.6 270 52.2
Zm00001eb074840 Zea mays HOM05D004980 ORTHO05D006505 6.8e-74 281.6 276 53.3
Actinidia02889 Actinidia chinensis HOM05D004980 ORTHO05D006505 2.0e-70 270.0 147 88.4
CBR_g19046 Chara braunii HOM05D004980 ORTHO05D006505 3.0e-66 256.1 295 46.1
Glyma.14G020732 Glycine max HOM05D004980 ORTHO05D006505 3.4e-65 252.7 183 69.4
CDE02G3733 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 2.7e-62 243.0 149 75.2
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 4.0e-58 229.2 169 66.9
CAN.G1099.1 Capsicum annuum HOM05D004980 ORTHO05D006505 4.0e-50 202.6 214 50.9
Nitab4.5_0000328g0140 Nicotiana tabacum HOM05D004980 ORTHO05D006505 4.0e-50 202.6 106 87.7
Nitab4.5_0002826g0110 Nicotiana tabacum HOM05D004980 ORTHO05D006505 8.9e-50 201.4 106 87.7
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 7.5e-49 198.4 227 46.3
MCO02G238 Micromonas commoda HOM05D004980 ORTHO05D006505 4.1e-47 192.6 288 39.9
VMungo0647G1280 Vigna mungo HOM05D004980 ORTHO05D006505 5.4e-47 192.2 104 85.6
Cfa026714 Carpinus fangiana HOM05D004980 ORTHO05D006505 3.5e-38 162.9 299 36.1
CDE06G0656 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 3.0e-37 159.8 165 50.3
PRCOL_00001455 Prasinoderma coloniale HOM05D004980 ORTHO05D006505 7.3e-36 155.2 288 33.7
Lj1A365T16 Lonicera japonica HOM05D004980 ORTHO05D006505 9.2e-31 138.3 67 92.5
CAN.G631.2 Capsicum annuum HOM05D004980 ORTHO05D043407 2.1e-30 137.1 130 52.3
Cre09.g402034 Chlamydomonas reinhardtii HOM05D004980 ORTHO05D006505 7.8e-30 135.2 239 33.5
Psat6g174400 Pisum sativum HOM05D004980 ORTHO05D322940 1.8e-26 124.0 98 63.3
Haze_27588 Corylus avellana HOM05D004980 ORTHO05D163887 1.1e-15 88.2 127 38.6
CAN.G699.10 Capsicum annuum HOM05D004980 ORTHO05D043407 6.2e-11 72.4 72 51.4
SEGI_30719 Sequoiadendron giganteum HOM05D004980 ORTHO05D384019 1.5e-09 67.8 99 39.4
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 2.7e-06 57.0 97 32.0


User provided reference genes

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