Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.1Z049390 Gossypium hirsutum HOM05D002560 ORTHO05D013255 2.0e-31 138.3 62 100.0
Gohir.A10G199133 Gossypium hirsutum HOM05D002560 ORTHO05D013255 4.9e-09 63.9 48 64.6
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.9e-09 63.9 30 96.7
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 6.4e-09 63.5 29 100.0
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 8.3e-09 63.2 29 96.6
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.1e-08 62.8 29 96.6
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 1.1e-08 62.8 29 96.6
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 1.1e-08 62.8 29 96.6
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.1e-08 62.8 29 96.6
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
BcaC02g08135 Brassica carinata HOM05D002560 ORTHO05D013255 1.4e-08 62.4 29 96.6
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.4e-08 62.4 29 96.6
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.4e-08 62.4 29 96.6
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
BolC4t27326H Brassica oleracea HOM05D002560 ORTHO05D013255 1.4e-08 62.4 29 96.6
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.4e-08 62.4 29 96.6
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
Os05g0307400 Oryza sativa ssp. japonica HOM05D000611 ORTHO05D007148 1.9e-08 62.0 29 96.6
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 1.9e-08 62.0 29 96.6
Gohir.A13G130801 Gossypium hirsutum HOM05D002560 ORTHO05D013255 2.4e-08 61.6 29 93.1
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 2.4e-08 61.6 29 96.6
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 2.4e-08 61.6 29 93.1
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 3.2e-08 61.2 29 96.6
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 7.1e-08 60.1 29 93.1
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 7.1e-08 60.1 29 93.1
Glyma.10G121548 Glycine max HOM05D002560 ORTHO05D013255 7.1e-08 60.1 29 93.1
Gohir.A13G144501 Gossypium hirsutum HOM05D002560 ORTHO05D013255 7.1e-08 60.1 28 96.4
Lsat_1_v5_gn_2_30201 Lactuca sativa HOM05D002560 ORTHO05D013255 7.1e-08 60.1 29 93.1
Lsat_1_v5_gn_7_100020 Lactuca sativa HOM05D002560 ORTHO05D013255 7.1e-08 60.1 29 93.1
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 7.1e-08 60.1 29 93.1
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 7.1e-08 60.1 29 93.1
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 9.2e-08 59.7 29 89.7
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 9.2e-08 59.7 29 96.6
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 9.2e-08 59.7 29 96.6
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.2e-07 59.3 29 96.6
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 1.2e-07 59.3 29 96.6
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 1.2e-07 59.3 29 96.6
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 1.2e-07 59.3 29 96.6
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.2e-07 59.3 29 96.6
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.2e-07 59.3 29 96.6
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.6e-07 58.9 29 96.6
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.6e-07 58.9 28 92.9
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 1.6e-07 58.9 29 93.1
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 1.6e-07 58.9 28 96.4
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 2.1e-07 58.5 29 93.1
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 2.7e-07 58.2 28 96.4
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 3.5e-07 57.8 29 93.1
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 3.5e-07 57.8 29 93.1
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 3.5e-07 57.8 29 93.1
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 3.5e-07 57.8 29 93.1
Solyc10g076260.2 Solanum lycopersicum HOM05D002560 ORTHO05D003782 3.5e-07 57.8 29 86.2
Sopen10g027880 Solanum pennellii HOM05D002560 ORTHO05D013255 3.5e-07 57.8 29 86.2
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 4.6e-07 57.4 28 89.3
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 1.0e-06 56.2 28 89.3
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.0e-06 56.2 27 96.3
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.0e-06 56.2 29 89.7
CSS0025386 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.3e-06 55.8 50 56.0
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.3e-06 55.8 29 89.7
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.3e-06 55.1 29 86.2
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.3e-06 55.1 29 86.2
Lsat_1_v5_gn_7_49460 Lactuca sativa HOM05D002560 ORTHO05D013255 3.9e-06 54.3 29 86.2
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 5.1e-06 53.9 29 82.8
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.6e-06 53.5 29 75.9
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 6.6e-06 53.5 29 86.2
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 8.6e-06 53.1 29 86.2


User provided reference genes

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