Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1537.7 752 100.0
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1463.0 753 95.0
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1392.9 754 90.1
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1387.1 754 89.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1299.6 748 85.3
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1297.0 753 84.7
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1288.1 754 84.2
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1260.4 759 82.6
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1253.8 757 82.7
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1198.0 763 79.9
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1117.8 755 73.9
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1116.3 754 72.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1107.0 751 72.7
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1106.3 756 73.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1105.5 754 72.5
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1102.4 755 72.6
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1102.0 765 71.9
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1100.1 761 73.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1094.7 756 72.9
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 754 72.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 753 71.6
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1090.9 754 70.7
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 756 72.6
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 756 72.8
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1087.0 754 72.1
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 779 69.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 753 70.8
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 0.0e+00 1076.6 755 73.4
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 755 73.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.6e-311 1071.2 755 72.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 3.6e-311 1071.2 777 69.0
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.2e-311 1070.5 779 68.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 9.6e-309 1063.1 752 70.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.1e-308 1062.0 778 68.6
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.8e-308 1061.6 778 68.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.6e-308 1061.2 754 69.9
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.8e-307 1058.9 778 67.9
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-307 1058.9 756 71.7
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.4e-305 1050.4 756 70.2
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 772 68.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 662 79.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.8e-302 1042.3 754 69.4
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.3e-302 1042.0 788 67.1
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.9e-301 1038.9 755 69.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-300 1036.2 754 69.5
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.5e-298 1027.7 755 69.9
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 5.8e-298 1027.3 722 71.9
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 5.8e-298 1027.3 801 65.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 2.4e-296 1021.9 778 66.2
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.2e-295 1019.6 771 65.2
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.5e-295 1018.1 780 67.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.5e-295 1018.1 773 65.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 4.6e-295 1017.7 786 66.2
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 4.3e-293 1011.1 770 65.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.6e-292 1009.2 772 64.5
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 3.7e-292 1008.1 770 65.1
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 775 65.5
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 4.0e-291 1004.6 777 65.0
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.3e-291 1004.2 755 68.5
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 6.9e-291 1003.8 777 64.1
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 6.9e-291 1003.8 776 64.4
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 9.0e-291 1003.4 777 66.3
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 3.4e-290 1001.5 776 64.7
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 5.8e-290 1000.7 753 67.3
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.0e-289 1000.0 755 66.8
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.3e-289 999.6 752 66.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.3e-289 999.6 755 67.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 2.9e-289 998.4 773 65.2
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.9e-289 998.4 776 65.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.4e-288 996.1 753 66.4
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 4.2e-288 994.6 753 66.3
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 5.5e-288 994.2 773 65.7
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.2e-287 993.0 753 66.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 7.9e-287 990.3 774 64.9
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 6.7e-286 987.3 752 65.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.1e-285 986.5 774 64.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.3e-284 983.0 773 65.3
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.6e-284 982.6 756 65.5
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 6.3e-284 980.7 776 63.3
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.8e-283 979.2 769 64.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 4.1e-283 978.0 752 65.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.4e-282 974.9 755 64.8
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 5.0e-281 971.1 754 64.7
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.1e-280 969.9 770 63.5
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.9e-280 969.1 776 63.0
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-280 969.1 776 63.0
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.3e-280 966.8 776 62.5
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 9.3e-280 966.8 774 63.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.6e-279 966.1 776 63.0
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 7.9e-279 963.8 805 62.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.3e-276 956.4 717 66.7
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.6e-276 956.1 774 63.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 3.7e-276 954.9 776 62.4
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.8e-276 954.5 776 62.4
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 6.3e-276 954.1 758 64.1
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 6.3e-276 954.1 835 61.3
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.8e-275 952.6 779 61.6
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 2.6e-274 948.7 779 61.4
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.5e-272 942.2 777 61.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 4.2e-272 941.4 768 62.6
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 4.2e-272 941.4 772 61.7
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.6e-271 937.9 777 61.3
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 6.1e-271 937.6 781 61.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 6.7e-270 934.1 816 59.6
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.7e-268 929.5 769 61.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.7e-268 929.5 783 59.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.8e-267 926.0 754 64.6
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.8e-267 926.0 778 61.3
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.1e-267 925.2 776 60.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 9.1e-267 923.7 778 60.5
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.2e-266 923.3 806 58.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.5e-266 921.4 778 61.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.9e-266 921.0 782 60.4
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.7e-265 919.5 770 61.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.9e-264 916.0 775 60.6
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 5.5e-264 914.4 775 59.6
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 5.5e-264 914.4 765 60.1
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 6.1e-263 911.0 784 61.1
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.2e-262 907.9 773 60.4
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-261 906.7 777 59.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.5e-261 906.4 768 60.9
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.7e-261 904.4 779 59.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.5e-258 895.2 779 59.3
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.7e-257 892.9 765 59.5
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.6e-255 885.2 757 60.8
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.0e-253 879.4 755 58.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.0e-253 879.4 762 60.8
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.1e-251 873.6 705 63.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 7.0e-251 870.9 782 58.7
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.4e-246 856.7 770 57.3
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.5e-240 836.6 721 61.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 3.2e-240 835.5 770 57.0
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.1e-235 820.5 682 62.8
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 8.6e-233 810.8 766 56.1
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 3.3e-232 808.9 775 54.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 5.6e-232 808.1 768 55.6
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.8e-230 801.2 755 56.0
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.4e-206 723.8 737 52.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 8.7e-185 651.4 733 45.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.6e-178 630.6 735 46.3
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.3e-176 622.9 792 43.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 9.6e-176 621.3 760 43.9
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.9e-172 609.8 421 69.8
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 3.2e-171 606.3 754 45.9
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 7.1e-171 605.1 769 44.2
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.7e-162 576.6 420 70.0
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 3.4e-157 559.7 738 41.7
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.0e-144 517.3 387 64.3
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.0e-144 517.3 387 64.3
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.0e-141 507.3 392 63.5
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.2e-136 491.5 273 82.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.2e-136 491.5 559 46.9
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.6e-116 422.2 461 52.1
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-115 421.8 453 50.1
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.4e-113 414.8 253 77.1
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 4.7e-98 363.2 756 34.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-79 302.0 276 56.5
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.0e-64 251.5 753 27.8
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.5e-51 208.0 288 42.7
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 7.7e-48 196.4 198 53.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.2e-46 190.7 142 64.8
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.5e-38 163.7 149 60.4
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-35 156.0 82 79.3
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.7e-27 126.3 65 78.5
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.1e-25 120.9 132 49.2
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.0e-23 114.0 133 46.6
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 5.2e-12 77.4 103 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 5.7e-11 73.9 55 61.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.4e-09 69.3 46 67.4
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 3.1e-09 68.2 88 44.3
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 7.7e-08 63.5 39 66.7


User provided reference genes

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