Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 1.4e-54 216.1 111 100.0
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.8e-54 215.7 111 93.7
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 1.7e-52 209.1 111 91.0
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 3.8e-52 208.0 111 91.0
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 1.2e-50 203.0 111 87.4
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 1.7e-49 199.1 111 85.6
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 6.6e-49 197.2 111 84.7
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 6.6e-49 197.2 111 84.7
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.1e-48 196.4 111 83.8
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.9e-48 195.7 111 86.5
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.6e-47 192.6 111 82.9
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 2.1e-47 192.2 112 83.9
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 2.1e-47 192.2 111 81.1
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.8e-47 191.8 99 91.9
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 4.7e-47 191.0 111 82.0
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 1.8e-46 189.1 112 82.1
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 2.4e-46 188.7 111 82.0
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 2.4e-46 188.7 112 82.1
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.1e-46 188.3 112 82.1
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 3.1e-46 188.3 111 82.0
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 6.9e-46 187.2 112 81.2
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 9.0e-46 186.8 112 81.2
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.5e-45 186.0 112 81.2
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.5e-45 186.0 112 80.4
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 2.0e-45 185.7 109 83.5
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.0e-45 185.7 111 80.2
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.6e-45 185.3 112 81.2
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.6e-45 185.3 112 80.4
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.6e-45 185.3 112 80.4
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 2.6e-45 185.3 112 80.4
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 3.4e-45 184.9 112 79.5
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 4.4e-45 184.5 111 81.1
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 5.8e-45 184.1 112 79.5
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 5.8e-45 184.1 112 79.5
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 7.6e-45 183.7 112 78.6
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 7.6e-45 183.7 112 79.5
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 9.9e-45 183.3 112 80.4
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 9.9e-45 183.3 111 80.2
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 1.3e-44 183.0 112 80.4
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 1.3e-44 183.0 112 80.4
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 1.7e-44 182.6 112 77.7
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.7e-44 182.6 112 80.4
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 1.7e-44 182.6 111 78.4
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 1.7e-44 182.6 112 80.4
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.2e-44 182.2 112 80.4
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 2.2e-44 182.2 112 79.5
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.9e-44 181.8 112 78.6
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 3.8e-44 181.4 112 79.5
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 4.9e-44 181.0 112 79.5
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 6.4e-44 180.6 111 76.6
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 8.4e-44 180.3 112 79.5
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 1.4e-43 179.5 112 78.6
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.9e-43 179.1 112 77.7
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.4e-43 178.7 112 77.7
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.4e-43 178.7 112 76.8
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 3.2e-43 178.3 112 76.8
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 4.2e-43 177.9 112 78.6
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 4.2e-43 177.9 112 78.6
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 5.4e-43 177.6 112 76.8
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 5.4e-43 177.6 112 77.7
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 7.1e-43 177.2 111 79.3
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 7.1e-43 177.2 112 76.8
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 9.3e-43 176.8 112 79.5
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 1.2e-42 176.4 112 75.9
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.2e-42 176.4 112 76.8
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.1e-42 175.6 112 76.8
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 3.5e-42 174.9 112 76.8
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 4.6e-42 174.5 112 78.6
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 4.6e-42 174.5 112 78.6
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 4.6e-42 174.5 111 76.6
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 4.6e-42 174.5 112 79.5
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 6.0e-42 174.1 112 75.9
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 7.8e-42 173.7 112 78.6
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 1.0e-41 173.3 112 75.0
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.0e-41 173.3 112 77.7
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 1.3e-41 172.9 97 82.5
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 1.3e-41 172.9 112 77.7
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.3e-41 172.9 112 74.1
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 1.3e-41 172.9 112 74.1
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.7e-41 172.6 112 76.8
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 1.7e-41 172.6 112 72.3
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 2.3e-41 172.2 112 77.7
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 2.3e-41 172.2 120 70.8
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 5.1e-41 171.0 112 77.7
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 6.6e-41 170.6 112 74.1
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 6.6e-41 170.6 112 75.0
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 8.7e-41 170.2 119 73.1
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 1.9e-40 169.1 112 73.2
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.9e-40 169.1 107 76.6
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 2.5e-40 168.7 110 72.7
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 3.3e-40 168.3 109 77.1
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 7.3e-40 167.2 112 75.0
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.3e-39 166.4 112 75.0
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 1.3e-39 166.4 112 75.0
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.3e-39 166.4 112 75.9
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 2.1e-39 165.6 98 79.6
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 2.8e-39 165.2 112 74.1
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 2.8e-39 165.2 112 74.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.6e-39 164.9 99 79.8
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 3.6e-39 164.9 99 79.8
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 3.6e-39 164.9 99 79.8
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 6.2e-39 164.1 101 76.2
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 6.2e-39 164.1 101 76.2
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 6.2e-39 164.1 112 70.5
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.1e-39 163.7 110 75.5
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.1e-38 163.3 102 78.4
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.1e-38 163.3 99 77.8
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.4e-38 162.9 143 59.4
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 4.0e-38 161.4 111 72.1
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 5.3e-38 161.0 99 76.8
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 6.9e-38 160.6 112 73.2
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 1.2e-37 159.8 112 72.3
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.2e-37 159.8 111 71.2
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.2e-37 159.8 133 65.4
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.5e-37 159.5 96 78.1
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 2.0e-37 159.1 114 71.1
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 3.4e-37 158.3 110 74.5
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 5.8e-37 157.5 99 76.8
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 7.6e-37 157.1 112 71.4
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 7.6e-37 157.1 112 71.4
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.6e-37 157.1 112 73.2
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 7.6e-37 157.1 100 77.0
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 7.6e-37 157.1 112 71.4
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.7e-36 156.0 113 68.1
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.7e-36 156.0 112 72.3
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 2.2e-36 155.6 112 70.5
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 2.2e-36 155.6 112 72.3
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 3.8e-36 154.8 112 71.4
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 3.8e-36 154.8 113 69.0
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 4.9e-36 154.5 112 70.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 4.9e-36 154.5 112 69.6
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 4.9e-36 154.5 112 69.6
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 4.9e-36 154.5 112 69.6
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 4.9e-36 154.5 105 73.3
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.1e-35 153.3 103 69.9
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 2.4e-35 152.1 99 74.7
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 4.2e-35 151.4 102 70.6
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 4.2e-35 151.4 105 70.5
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 2.1e-34 149.1 128 61.7
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 2.7e-34 148.7 111 68.5
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.3e-33 146.4 99 70.7
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.9e-33 144.8 99 70.7
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 2.5e-32 142.1 100 71.0
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 3.3e-32 141.7 100 70.0
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 5.6e-32 141.0 100 70.0
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 9.6e-32 140.2 99 70.7
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.7e-31 138.3 103 68.9
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 1.4e-30 136.3 108 63.9
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 6.9e-30 134.0 112 64.3
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 9.0e-30 133.7 112 62.5
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 2.6e-29 132.1 112 63.4
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 2.6e-29 132.1 87 72.4
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 3.4e-29 131.7 115 59.1
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 1.7e-28 129.4 110 56.4
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 4.9e-28 127.9 104 58.7
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.4e-27 125.6 68 88.2
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.5e-24 116.3 101 61.4
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 9.6e-24 113.6 106 51.9
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.6e-23 112.8 69 81.2
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 2.1e-23 112.5 69 79.7
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 4.8e-23 111.3 90 63.3
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 2.4e-22 109.0 64 81.2
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 4.0e-22 108.2 106 50.9
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 6.9e-22 107.5 69 75.4
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 6.9e-22 107.5 111 57.7
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 2.0e-21 105.9 67 80.6
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.3e-20 103.2 72 73.6
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 2.2e-20 102.4 69 71.0
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 4.9e-20 101.3 66 72.7
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 4.6e-18 94.7 63 73.0
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 7.9e-18 94.0 105 48.6
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 1.8e-17 92.8 69 69.6
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 8.7e-17 90.5 63 73.0
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 3.7e-15 85.1 78 56.4
Ca_03029_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 3.4e-13 78.6 37 94.6
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 7.2e-11 70.9 68 55.9
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 4.6e-10 68.2 36 80.6
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.1e-08 63.5 143 32.9
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 3.3e-08 62.0 53 58.5
TPR.G20575 Trifolium pratense HOM05D003598 ORTHO05D004198 3.7e-07 58.5 68 52.9
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 2.4e-06 55.8 37 78.4


User provided reference genes

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