Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 3.4e-128 461.8 262 100.0
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 3.2e-86 322.4 222 75.2
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 1.3e-82 310.5 219 73.5
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 2.9e-79 299.3 223 70.4
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.1e-77 293.1 216 71.3
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 6.1e-77 291.6 215 71.2
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 3.3e-75 285.8 220 70.0
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 9.1e-73 277.7 220 66.8
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 3.5e-72 275.8 200 69.5
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 4.5e-72 275.4 218 67.0
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.3e-71 273.9 200 69.0
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.7e-71 273.5 200 69.0
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 2.2e-71 273.1 190 71.1
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 5.0e-71 271.9 208 66.8
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.1e-70 270.8 201 68.7
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 3.2e-70 269.2 190 71.1
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 3.2e-70 269.2 236 64.0
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 1.2e-69 267.3 228 62.7
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.1e-69 266.5 214 67.3
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 2.7e-69 266.2 194 69.6
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 3.6e-69 265.8 195 70.3
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 6.1e-69 265.0 190 67.9
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.0e-68 264.2 215 61.9
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.4e-68 263.8 214 65.9
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 4.0e-68 262.3 190 68.9
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 8.8e-68 261.2 213 61.0
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 3.4e-67 259.2 216 60.6
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 3.4e-67 259.2 217 59.9
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 4.4e-67 258.8 215 62.8
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 4.4e-67 258.8 201 63.7
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 7.5e-67 258.1 200 65.0
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 9.7e-67 257.7 190 69.5
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.3e-66 257.3 201 67.2
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 1.7e-66 256.9 215 60.0
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.7e-66 256.9 200 63.0
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.2e-66 256.5 190 68.9
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 2.2e-66 256.5 190 68.4
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 2.8e-66 256.1 215 59.5
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.7e-66 255.8 214 60.3
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 3.7e-66 255.8 225 61.3
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 6.3e-66 255.0 215 60.0
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 6.3e-66 255.0 215 60.0
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 8.3e-66 254.6 190 67.9
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 8.3e-66 254.6 211 64.0
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.1e-65 254.2 216 60.2
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.4e-65 253.8 214 59.8
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.8e-65 253.4 214 59.8
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 3.1e-65 252.7 224 58.5
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 7.0e-65 251.5 211 60.2
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 9.1e-65 251.1 201 64.7
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 9.1e-65 251.1 203 64.5
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 1.2e-64 250.8 190 65.3
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.2e-64 250.8 184 70.1
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 4.5e-64 248.8 203 62.1
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 7.7e-64 248.1 201 61.7
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 2.2e-63 246.5 201 61.2
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 5.0e-63 245.4 224 57.1
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.5e-62 243.8 201 61.7
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.5e-62 243.8 201 61.2
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.5e-62 243.8 201 62.2
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 2.5e-62 243.0 200 61.0
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 7.2e-62 241.5 201 60.2
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 9.4e-62 241.1 201 61.2
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.2e-61 240.7 190 61.6
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.6e-61 240.4 201 62.2
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 4.7e-61 238.8 201 59.7
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 6.1e-61 238.4 202 59.9
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.4e-60 237.3 199 61.3
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.4e-60 237.3 201 61.2
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 1.8e-60 236.9 217 57.6
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 2.3e-60 236.5 199 59.8
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 3.0e-60 236.1 193 59.6
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 1.5e-59 233.8 172 66.3
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 2.6e-59 233.0 232 54.7
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 9.8e-59 231.1 216 59.3
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 2.8e-58 229.6 216 59.3
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 4.8e-58 228.8 193 61.1
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 1.4e-57 227.3 197 60.9
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 9.1e-57 224.6 185 60.0
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 1.2e-56 224.2 202 57.9
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.7e-56 223.0 190 58.9
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 2.9e-55 219.5 175 64.6
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.1e-54 217.6 209 53.6
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.5e-54 216.5 171 60.2
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.2e-53 214.2 189 57.1
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 1.6e-53 213.8 183 60.1
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.6e-53 212.6 171 64.3
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 8.0e-53 211.5 182 59.3
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 8.9e-52 208.0 193 54.4
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 2.6e-51 206.5 175 62.9
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 2.6e-51 206.5 184 59.2
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 5.7e-51 205.3 190 60.5
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.6e-45 187.2 190 52.6
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 4.7e-45 185.7 175 60.0
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 5.2e-44 182.2 174 56.3
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 5.2e-44 182.2 157 58.6
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 1.2e-43 181.0 166 53.6
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.0e-43 180.3 189 47.6
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.6e-37 160.6 160 52.5
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.6e-37 159.5 156 56.4
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.6e-37 159.5 189 42.9
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.4e-36 157.5 190 47.9
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 2.0e-35 153.7 196 42.9
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 4.4e-35 152.5 201 40.3
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 3.2e-33 146.4 119 63.0
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 2.1e-32 143.7 118 62.7
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 6.0e-32 142.1 99 69.7
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 1.0e-31 141.4 81 82.7
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.3e-31 141.0 81 82.7
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.3e-31 141.0 231 40.7
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 7.3e-30 135.2 259 37.5
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.6e-29 134.0 121 58.7
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.7e-26 124.0 181 38.1
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.9e-26 122.5 211 37.0
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 5.4e-25 119.0 118 52.5
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.2e-24 117.9 87 65.5
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 3.0e-23 113.2 98 58.2
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.7e-21 105.9 207 32.9
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 4.4e-19 99.4 139 48.2
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 5.8e-19 99.0 85 61.2
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.9e-17 94.0 96 56.2
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.0e-15 86.7 57 70.2
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 9.9e-11 71.6 112 41.1
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 1.6e-08 64.3 41 65.9
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 3.0e-07 60.1 66 45.5


User provided reference genes

Program Settings