Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 8.8e-125 450.3 226 100.0
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.0e-113 412.5 226 91.6
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.3e-111 405.2 226 90.7
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.0e-104 383.6 226 86.3
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 5.8e-100 367.9 227 81.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.2e-99 365.9 223 83.4
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.2e-99 365.9 228 79.8
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.9e-98 362.8 223 81.6
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.9e-98 362.8 223 81.6
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 4.1e-98 361.7 229 82.1
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 5.4e-98 361.3 230 80.0
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 5.6e-95 351.3 223 77.6
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 3.1e-93 345.5 223 76.2
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 3.1e-93 345.5 222 76.6
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 8.9e-93 344.0 221 77.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 8.9e-93 344.0 224 75.4
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 8.9e-93 344.0 223 75.8
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 8.9e-93 344.0 222 77.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.2e-92 343.6 223 74.4
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.5e-92 343.2 221 77.4
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.5e-92 343.2 219 74.4
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-92 343.2 223 77.1
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 2.0e-92 342.8 224 75.4
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.0e-92 342.8 226 74.3
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 2.6e-92 342.4 227 74.4
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 4.4e-92 341.7 224 75.0
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 7.6e-92 340.9 226 75.7
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 9.9e-92 340.5 226 73.9
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 9.9e-92 340.5 229 74.2
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 9.9e-92 340.5 223 74.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.3e-91 340.1 228 73.7
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.7e-91 339.7 225 74.2
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.2e-91 339.3 223 74.0
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.9e-91 339.0 223 74.0
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.7e-91 338.6 221 75.1
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.4e-91 337.8 223 73.1
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.1e-90 337.0 227 76.2
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.9e-90 336.3 227 70.9
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-90 336.3 223 75.3
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.4e-90 335.9 227 74.4
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.1e-90 335.1 223 73.5
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 4.1e-90 335.1 221 75.1
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 5.4e-90 334.7 211 77.7
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 7.1e-90 334.3 222 74.8
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.2e-89 333.6 219 72.1
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.6e-89 333.2 217 73.7
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.7e-89 332.4 219 72.6
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.5e-89 332.0 229 72.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.5e-89 332.0 221 73.3
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.6e-89 331.6 223 75.3
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 6.0e-89 331.3 225 71.6
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 1.0e-88 330.5 227 71.4
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.0e-88 330.5 227 70.9
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.0e-88 330.5 223 74.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.3e-88 330.1 220 74.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.3e-88 329.3 223 74.0
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.3e-88 329.3 223 74.9
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 2.3e-88 329.3 226 70.4
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.0e-88 328.9 223 73.5
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 3.9e-88 328.6 227 74.9
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 6.6e-88 327.8 226 70.4
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 8.6e-88 327.4 224 73.2
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.1e-87 327.0 226 69.5
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.1e-87 327.0 218 72.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-87 326.6 226 69.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.5e-87 325.9 211 75.4
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.5e-87 325.9 229 68.6
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.3e-87 325.5 229 70.3
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.3e-87 325.5 223 71.7
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.3e-87 325.5 223 71.7
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 7.3e-87 324.3 223 71.7
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 7.3e-87 324.3 220 74.1
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.2e-86 323.6 219 72.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.6e-86 323.2 225 69.8
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.8e-86 322.4 228 69.7
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.8e-86 322.4 229 67.7
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 2.8e-86 322.4 223 71.3
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 3.6e-86 322.0 225 68.4
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 3.6e-86 322.0 231 66.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.2e-86 321.2 221 70.1
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.2e-86 321.2 223 73.5
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 8.1e-86 320.9 221 69.7
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-85 320.5 226 68.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.1e-85 320.5 226 68.1
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.4e-85 320.1 223 71.3
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.1e-85 318.9 221 71.0
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 3.1e-85 318.9 218 72.5
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.1e-85 318.9 228 67.5
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-84 317.0 248 66.1
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 5.8e-84 314.7 237 66.2
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 2.9e-83 312.4 221 68.8
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.9e-83 312.4 237 65.4
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.8e-83 312.0 237 65.4
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 4.9e-83 311.6 229 66.8
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.1e-82 310.5 214 68.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.9e-82 309.7 221 70.1
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.9e-82 309.7 223 70.0
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.6e-81 306.6 224 68.3
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.1e-81 306.2 225 67.6
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.7e-81 305.8 324 53.4
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 4.6e-81 305.1 221 68.3
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.3e-80 303.5 218 66.5
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 3.9e-80 302.0 222 64.9
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.5e-79 299.3 227 65.6
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 5.6e-79 298.1 218 65.6
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.1e-78 296.2 225 63.6
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 4.8e-78 295.0 221 65.2
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 6.2e-78 294.7 221 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 8.1e-78 294.3 219 64.8
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.4e-77 292.7 219 64.4
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.4e-77 292.7 222 64.0
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.1e-77 292.4 222 64.0
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 3.4e-76 288.9 308 51.9
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.4e-76 288.5 219 63.9
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.3e-75 287.0 216 64.4
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 2.9e-75 285.8 224 61.6
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 6.0e-73 278.1 355 45.6
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.3e-71 271.9 220 60.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 8.1e-70 267.7 219 58.4
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.8e-69 266.5 223 61.0
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 4.0e-69 265.4 219 56.6
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 5.3e-69 265.0 219 57.1
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.7e-67 260.0 198 73.7
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 4.6e-65 251.9 153 78.4
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.5e-63 246.9 173 71.1
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.8e-61 240.0 152 74.3
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.5e-60 236.9 153 74.5
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.5e-58 228.4 177 67.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.2e-57 227.3 152 71.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 5.0e-51 205.3 143 69.9
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.1e-50 204.1 127 78.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.4e-50 203.8 167 62.3
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.5e-50 203.0 130 75.4
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.3e-48 196.4 107 85.0
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.6e-46 190.3 222 49.1
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 2.2e-43 179.9 111 73.9
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 2.2e-43 179.9 111 73.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 7.2e-42 174.9 99 80.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 7.4e-39 164.9 95 80.0
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 9.1e-37 157.9 116 69.0
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.1e-34 151.0 199 40.2
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.4e-34 150.6 119 67.2
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.4e-34 150.6 120 65.0
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 9.4e-34 147.9 116 68.1
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.6e-33 147.1 105 71.4
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.2e-27 126.7 142 49.3
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.9e-26 123.6 82 70.7
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 9.1e-21 104.8 81 63.0
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.2e-20 104.4 126 49.2
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 4.8e-14 82.4 202 32.7
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.0e-12 77.0 57 66.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.1e-10 71.2 76 48.7
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.9e-10 70.5 61 52.5
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 4.9e-06 55.8 48 54.2


User provided reference genes

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