Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 0.0e+00 2600.5 1379 100.0
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 0.0e+00 2291.2 1389 89.3
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 0.0e+00 2061.2 1394 80.8
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 0.0e+00 1989.2 1391 78.4
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 0.0e+00 1612.0 1408 66.1
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 0.0e+00 1608.2 1408 66.1
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 0.0e+00 1578.9 1412 66.3
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 0.0e+00 1559.7 1418 64.2
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 0.0e+00 1544.6 1427 65.2
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 0.0e+00 1378.6 1468 58.3
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 0.0e+00 1312.7 1412 56.4
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 0.0e+00 1312.0 1103 67.2
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 7.4e-307 1057.7 1408 49.9
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 9.1e-281 971.1 1423 45.7
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 8.8e-260 901.4 1421 44.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 8.3e-258 894.8 1409 43.9
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.2e-257 891.3 1317 44.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.2e-248 864.4 1332 43.2
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 5.0e-239 832.4 1425 42.1
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.6e-231 805.4 1436 42.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.5e-230 804.3 1436 42.5
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-223 781.2 1338 41.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 2.5e-222 776.9 1307 42.5
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.4e-219 766.5 1422 40.7
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 4.2e-217 759.6 1329 40.8
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.2e-216 758.1 1431 40.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 2.1e-216 757.3 1297 41.9
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.3e-206 723.0 1345 39.5
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.4e-201 708.0 1444 40.4
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 7.1e-201 705.7 1296 40.5
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.9e-199 699.9 1331 39.4
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.5e-198 697.2 1500 37.9
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 6.2e-197 692.6 1420 38.7
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 6.2e-197 692.6 1423 38.6
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 8.1e-197 692.2 1421 38.6
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.4e-195 686.8 1424 37.8
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 7.6e-195 685.6 1305 39.8
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.7e-194 684.5 1419 38.7
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 2.7e-192 677.2 1429 38.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.9e-191 673.3 1438 37.7
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.0e-183 648.7 1429 37.7
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 4.3e-182 643.3 1447 38.1
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 4.8e-181 639.8 1427 37.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 4.5e-179 633.3 1478 37.7
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 2.1e-176 624.4 1498 35.9
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 4.8e-173 613.2 1442 36.1
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.4e-172 611.7 1449 37.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.7e-162 578.2 1259 37.8
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 6.5e-162 576.2 1451 34.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.1e-148 532.3 1448 33.7
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 5.2e-143 513.5 1341 34.1
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 8.8e-143 512.7 1388 34.2
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 7.5e-142 509.6 1444 34.3
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.0e-139 501.5 1353 35.7
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.9e-138 497.7 1428 33.7
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.9e-133 481.1 1489 31.2
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 2.7e-131 474.6 1407 32.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.0e-130 471.1 1439 31.4
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 4.0e-127 460.7 1382 33.9
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.0e-122 446.0 1375 32.7
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.3e-122 445.7 1468 30.9
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 3.9e-122 444.1 1453 32.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.6e-113 413.7 1423 32.0
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 4.7e-112 410.6 1185 33.6
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 9.2e-108 396.4 1418 30.4
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 5.8e-102 377.1 572 44.9
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.4e-94 351.3 946 33.5
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.5e-94 350.9 1465 29.8
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 5.4e-92 344.0 778 35.3
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 7.1e-92 343.6 304 60.9
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 4.2e-84 317.8 1194 29.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 5.1e-82 310.8 772 38.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 1.6e-80 305.8 542 45.2
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-80 305.4 1063 31.0
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.8e-77 294.7 691 34.4
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.1e-71 274.6 1181 29.2
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 5.0e-69 267.7 953 30.5
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 3.0e-66 258.5 738 32.9
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.4e-63 249.6 745 30.2
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 5.3e-63 247.7 697 33.3
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.5e-61 240.4 695 30.9
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.9e-60 239.2 1335 27.3
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.9e-58 231.5 705 31.1
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 4.5e-54 218.0 1143 29.3
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 5.0e-53 214.5 1200 27.5
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 5.5e-52 211.1 659 29.7
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.0e-50 206.8 1059 26.6
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 3.7e-48 198.4 942 27.7
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.7e-48 198.4 1221 27.1
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.8e-47 196.1 400 35.2
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.1e-47 194.9 1168 26.9
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 1.0e-45 190.3 1202 27.6
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 6.5e-45 187.6 1147 27.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.5e-44 185.7 1191 27.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.0e-42 178.3 377 36.1
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 1.4e-39 169.9 168 60.1
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.1e-39 168.7 302 43.7
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 1.7e-37 162.9 158 60.8
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 5.5e-36 157.9 1333 25.1
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 7.2e-36 157.5 1389 24.5
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.7e-35 155.6 1304 24.8
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 8.8e-34 150.6 1088 25.9
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 1.2e-30 140.2 139 61.9
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.0e-30 139.4 388 35.6
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.7e-29 136.3 336 36.9
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.7e-29 136.3 425 34.8
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-28 133.7 1181 25.0
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 1.1e-28 133.7 492 31.5
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.5e-28 133.3 493 31.0
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 1.5e-28 133.3 494 30.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.9e-28 132.9 476 31.1
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 7.2e-28 131.0 562 30.1
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.6e-27 129.8 800 27.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 8.0e-27 127.5 573 29.7
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 1.7e-24 119.8 239 41.0
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 8.3e-24 117.5 752 26.9
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.8e-23 116.3 750 26.7
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 1.0e-21 110.5 520 29.2
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 3.8e-21 108.6 546 30.0
Psat0ss3759g0400 Pisum sativum HOM05D000846 ORTHO05D001340 4.3e-20 105.1 81 71.6
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 5.6e-20 104.8 1133 24.1
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 7.3e-20 104.4 532 29.1
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-19 103.6 421 29.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.6e-19 103.2 1509 23.8
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.8e-19 102.4 1542 24.3
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 6.1e-19 101.3 793 28.2
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.2e-17 97.1 495 28.3
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 7.5e-17 94.4 474 30.8
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.9e-16 91.7 330 30.9
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 9.2e-15 87.4 150 40.7
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-14 84.7 365 31.2
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 6.0e-14 84.7 283 36.7
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 1.9e-12 79.7 671 26.4
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-11 77.0 189 34.4
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-11 76.3 171 35.7
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.1e-10 73.9 1487 22.9
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-10 73.9 224 34.4
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 1.8e-10 73.2 302 32.8
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 4.0e-10 72.0 326 30.4
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 2.0e-09 69.7 161 36.0
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.0e-09 69.7 89 44.9
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.6e-09 69.3 609 27.1
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 5.8e-09 68.2 1147 23.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-08 67.0 161 35.4
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 3.7e-08 65.5 122 33.6
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.1e-07 62.0 329 26.1
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.0e-07 61.2 51 64.7
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 2.1e-06 59.7 417 27.6
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 2.1e-06 59.7 1445 22.8
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 3.5e-06 58.9 262 24.0
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 3.5e-06 58.9 102 33.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.6e-06 58.5 427 27.4


User provided reference genes

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