Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 1.1e-159 566.6 294 100.0
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 7.9e-158 560.5 294 99.0
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 6.9e-146 520.8 294 92.2
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 3.8e-136 488.4 299 86.0
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 4.7e-134 481.5 297 84.8
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 6.1e-134 481.1 297 84.5
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 2.2e-131 472.6 297 83.5
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 8.2e-131 470.7 297 82.5
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 2.4e-130 469.2 296 83.8
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 7.7e-129 464.2 297 81.8
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 6.5e-128 461.1 295 83.1
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 8.0e-126 454.1 297 80.8
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 8.8e-125 450.7 296 79.7
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 1.5e-124 449.9 296 79.7
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 2.0e-124 449.5 296 80.1
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 9.7e-124 447.2 296 79.4
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 3.7e-123 445.3 296 80.1
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 3.7e-123 445.3 296 78.7
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 4.8e-123 444.9 299 79.6
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 4.8e-123 444.9 295 79.3
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 9.1e-122 440.7 300 78.0
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 1.6e-121 439.9 296 78.7
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 5.9e-121 438.0 297 78.8
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 7.7e-121 437.6 295 79.0
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 7.7e-121 437.6 296 77.0
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 6.5e-120 434.5 301 77.7
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 1.5e-119 433.3 299 77.9
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 1.5e-119 433.3 298 77.2
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 2.5e-119 432.6 300 76.7
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 2.5e-119 432.6 298 78.9
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 2.5e-119 432.6 296 77.7
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.2e-119 432.2 298 76.8
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.2e-119 431.8 298 76.8
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.2e-119 431.8 298 76.8
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.5e-119 431.4 298 76.8
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 5.5e-119 431.4 301 75.7
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 5.5e-119 431.4 295 76.9
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 5.5e-119 431.4 295 77.3
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 7.2e-119 431.0 297 76.8
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 9.4e-119 430.6 298 76.8
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 9.4e-119 430.6 296 77.0
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 2.1e-118 429.5 297 76.1
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 2.7e-118 429.1 299 76.9
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 3.6e-118 428.7 298 77.9
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 6.1e-118 427.9 298 76.8
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 8.0e-118 427.6 296 76.7
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 1.0e-117 427.2 296 75.0
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 1.0e-117 427.2 296 77.4
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 1.4e-117 426.8 299 74.9
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.3e-117 426.0 298 76.2
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 8.8e-117 424.1 294 76.9
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 2.0e-116 422.9 306 73.2
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 5.7e-116 421.4 305 74.1
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 7.5e-116 421.0 296 74.3
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 8.3e-115 417.5 296 73.3
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.1e-114 417.2 298 75.2
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 3.1e-114 415.6 296 75.7
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 7.0e-114 414.5 303 74.9
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 2.0e-113 412.9 294 74.5
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 2.7e-113 412.5 301 73.8
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 5.9e-113 411.4 296 75.3
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.3e-112 410.2 297 73.4
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 1.3e-112 410.2 294 75.2
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 1.3e-112 410.2 296 75.7
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.7e-112 409.8 298 74.2
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 2.2e-112 409.5 297 73.7
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 3.8e-112 408.7 295 75.6
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 5.0e-112 408.3 294 74.8
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 5.0e-112 408.3 315 71.1
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 6.5e-112 407.9 296 74.7
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 1.5e-111 406.8 295 73.6
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 1.5e-111 406.8 297 73.7
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 7.2e-111 404.4 295 75.9
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 7.2e-111 404.4 295 75.9
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 7.2e-111 404.4 295 75.9
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 9.4e-111 404.1 294 73.5
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 1.6e-110 403.3 295 75.3
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 1.6e-110 403.3 295 75.9
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 1.6e-110 403.3 295 75.9
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 2.1e-110 402.9 296 73.6
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 2.7e-110 402.5 295 73.9
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 1.0e-109 400.6 296 73.3
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 1.4e-109 400.2 294 74.5
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 8.8e-109 397.5 280 77.1
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 3.4e-108 395.6 297 72.4
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 9.8e-108 394.0 297 71.0
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 9.8e-108 394.0 298 71.5
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.2e-107 392.9 298 71.5
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 3.7e-107 392.1 296 70.3
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 1.8e-106 389.8 229 85.2
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 3.1e-106 389.0 299 72.2
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 1.6e-105 386.7 299 71.2
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 1.6e-105 386.7 236 82.6
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 2.0e-105 386.3 297 69.7
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 4.5e-105 385.2 293 71.7
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 4.5e-105 385.2 235 85.1
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 4.5e-105 385.2 296 70.9
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 2.5e-103 379.4 297 68.4
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 1.6e-102 376.7 295 68.5
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 1.8e-101 373.2 275 73.1
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 2.3e-101 372.9 283 72.4
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 5.7e-100 368.2 313 67.7
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 3.7e-99 365.5 234 80.8
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 3.2e-98 362.5 288 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-92 344.0 284 66.9
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 5.8e-92 341.7 213 84.0
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 7.0e-90 334.7 301 63.8
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 2.0e-89 333.2 227 73.6
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 6.6e-88 328.2 281 65.1
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.1e-87 327.4 286 63.3
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 4.4e-84 315.5 231 69.7
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.6e-81 307.0 238 68.1
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 2.7e-81 306.2 229 69.9
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 2.6e-76 289.7 244 61.9
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.9e-71 273.5 203 66.5
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 2.1e-62 243.4 137 85.4
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 5.6e-55 218.8 135 79.3
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 1.6e-49 200.7 229 43.7
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 7.4e-47 191.8 202 47.5
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 6.3e-38 162.2 227 37.9
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.2e-36 157.9 87 89.7
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 2.9e-35 153.3 89 86.5
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 7.2e-34 148.7 83 89.2
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 9.4e-26 121.7 64 93.8
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 6.7e-08 62.4 86 50.0


User provided reference genes

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