Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G230100 Glycine max HOM05D001276 ORTHO05D001085 1.0e-42 176.4 94 100.0
Glyma.10G158500 Glycine max HOM05D001276 ORTHO05D001085 3.1e-15 85.1 145 46.2
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 5.1e-10 67.8 41 87.8
Psat6g148160 Pisum sativum HOM05D001276 ORTHO05D001085 8.8e-10 67.0 41 85.4
Lj5g0027583 Lotus japonicus HOM05D001276 ORTHO05D001085 3.3e-09 65.1 41 82.9
VMungo0720G2857 Vigna mungo HOM05D001276 ORTHO05D001085 7.4e-09 63.9 41 82.9
arahy.Tifrunner.gnm1.ann1.FL5QND Arachis hypogaea HOM05D001276 ORTHO05D001085 4.8e-08 61.2 38 84.2
arahy.Tifrunner.gnm1.ann1.N2VJYT Arachis hypogaea HOM05D001276 ORTHO05D001085 4.8e-08 61.2 38 84.2
TPR.G2773 Trifolium pratense HOM05D001276 ORTHO05D001085 8.2e-08 60.5 38 81.6
Nitab4.5_0001459g0090 Nicotiana tabacum HOM05D001276 ORTHO05D001085 1.1e-07 60.1 39 76.9
Nitab4.5_0009936g0020 Nicotiana tabacum HOM05D001276 ORTHO05D001085 1.1e-07 60.1 39 76.9
Peaxi162Scf00033g01724 Petunia axillaris HOM05D001276 ORTHO05D001085 1.1e-07 60.1 39 76.9
Solyc06g054510.4 Solanum lycopersicum HOM05D001276 ORTHO05D001085 1.1e-07 60.1 39 76.9
Sopen06g019580 Solanum pennellii HOM05D001276 ORTHO05D001085 1.1e-07 60.1 39 76.9
PGSC0003DMG400030763 Solanum tuberosum HOM05D001276 ORTHO05D001085 1.1e-07 60.1 39 76.9
CAN.G256.7 Capsicum annuum HOM05D001276 ORTHO05D001085 3.1e-07 58.5 39 74.4
ClCG02G016240 Citrullus lanatus HOM05D001276 ORTHO05D001085 3.1e-07 58.5 39 76.9
Thecc.05G252900 Theobroma cacao HOM05D001276 ORTHO05D001085 4.1e-07 58.2 39 74.4
Glyma.05G201300 Glycine max HOM05D001276 ORTHO05D001085 5.3e-07 57.8 69 52.2
HanXRQChr14g0445471 Helianthus annuus HOM05D001276 ORTHO05D001085 5.3e-07 57.8 39 74.4
Nn3g16308 Nelumbo nucifera HOM05D001276 ORTHO05D001085 5.3e-07 57.8 69 52.2
ClCG06G005420 Citrullus lanatus HOM05D001276 ORTHO05D001085 6.9e-07 57.4 39 76.9
MELO3C021366.2 Cucumis melo HOM05D001276 ORTHO05D001085 6.9e-07 57.4 39 76.9
CsaV3_6G005690 Cucumis sativus L. HOM05D001276 ORTHO05D001085 6.9e-07 57.4 39 76.9
Glyma.08G008800 Glycine max HOM05D001276 ORTHO05D001085 6.9e-07 57.4 69 50.7
HanXRQChr08g0227701 Helianthus annuus HOM05D001276 ORTHO05D001085 6.9e-07 57.4 38 73.7
HanXRQChr17g0560841 Helianthus annuus HOM05D001276 ORTHO05D001085 6.9e-07 57.4 39 71.8
SalBow5G0016 Salvia bowleyana HOM05D001276 ORTHO05D001085 6.9e-07 57.4 38 76.3
SalBow5G2878 Salvia bowleyana HOM05D001276 ORTHO05D001085 6.9e-07 57.4 38 76.3
MELO3C004338.2 Cucumis melo HOM05D001276 ORTHO05D001085 9.1e-07 57.0 38 76.3
CsaV3_2G004530 Cucumis sativus L. HOM05D001276 ORTHO05D001085 9.1e-07 57.0 38 76.3
ECA238G4209 Erigeron canadensis HOM05D001276 ORTHO05D001085 9.1e-07 57.0 39 74.4
Manes.09G160200 Manihot esculenta HOM05D001276 ORTHO05D001085 9.1e-07 57.0 39 71.8
Prupe.6G335300 Prunus persica HOM05D001276 ORTHO05D001085 9.1e-07 57.0 76 48.7
Sed0019593 Sechium edule HOM05D001276 ORTHO05D001085 9.1e-07 57.0 36 83.3
ATR0706G235 Amborella trichopoda HOM05D001276 ORTHO05D001085 1.2e-06 56.6 39 69.2
Aqoxy2G03126 Aquilegia oxysepala HOM05D001276 ORTHO05D001085 1.2e-06 56.6 39 74.4
GSVIVG01004932001 Vitis vinifera HOM05D001276 ORTHO05D001085 1.2e-06 56.6 69 49.3
MSTRG.10048 Avicennia marina HOM05D001276 ORTHO05D001085 1.5e-06 56.2 37 75.7
MSTRG.21816 Avicennia marina HOM05D001276 ORTHO05D001085 1.5e-06 56.2 37 75.7
CSS0031867 Camellia sinensis var. sinensis HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
Dinv44432 Davidia involucrata HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
Duzib128G1526 Durio zibethinus HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
Duzib128G1724 Durio zibethinus HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
Duzib177G0726 Durio zibethinus HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
Eucgr.B01262 Eucalyptus grandis HOM05D001276 ORTHO05D001085 1.5e-06 56.2 37 75.7
Eucgr.H03718 Eucalyptus grandis HOM05D001276 ORTHO05D001085 1.5e-06 56.2 37 75.7
FAN05G0334 Fragaria x ananassa HOM05D001276 ORTHO05D001085 1.5e-06 56.2 39 71.8
Gohir.D13G104400 Gossypium hirsutum HOM05D001276 ORTHO05D001085 1.5e-06 56.2 39 71.8
Gorai.013G116900 Gossypium raimondii HOM05D001276 ORTHO05D001085 1.5e-06 56.2 39 71.8
MBI19_g04670_MAGBIO Magnolia biondii HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
MD12G1230700 Malus domestica HOM05D001276 ORTHO05D001085 1.5e-06 56.2 37 75.7
Prupe.1G142900 Prunus persica HOM05D001276 ORTHO05D001085 1.5e-06 56.2 82 42.7
Prupe.5G143700 Prunus persica HOM05D001276 ORTHO05D001085 1.5e-06 56.2 69 47.8
QL03p000959 Quercus lobata HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
Sed0006202 Sechium edule HOM05D001276 ORTHO05D001085 1.5e-06 56.2 38 73.7
unitig_22.g6333 Utricularia gibba HOM05D001276 ORTHO05D001085 1.5e-06 56.2 37 78.4
Atru.chr4.2745 Acer truncatum HOM05D001276 ORTHO05D001085 2.0e-06 55.8 38 71.1
Cpa.g.sc16.107 Carica papaya HOM05D001276 ORTHO05D001085 2.0e-06 55.8 82 42.7
Cfa015501 Carpinus fangiana HOM05D001276 ORTHO05D001085 2.0e-06 55.8 38 71.1
Haze_01051 Corylus avellana HOM05D001276 ORTHO05D001085 2.0e-06 55.8 38 71.1
Dinv38331 Davidia involucrata HOM05D001276 ORTHO05D001085 2.0e-06 55.8 39 71.8
Duzib212G0038 Durio zibethinus HOM05D001276 ORTHO05D001085 2.0e-06 55.8 38 71.1
FvH4_6g04190 Fragaria vesca HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
FAN02G1817 Fragaria x ananassa HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
FAN09G2229 Fragaria x ananassa HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
FAN09G4240 Fragaria x ananassa HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
FAN14G3063 Fragaria x ananassa HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
Glyma.03G242600 Glycine max HOM05D001276 ORTHO05D001085 2.0e-06 55.8 39 71.8
QL06p007261 Quercus lobata HOM05D001276 ORTHO05D001085 2.0e-06 55.8 38 73.7
RcHm_v2.0_Chr3g0452861 Rosa chinensis HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
Sc13g0003650 Simmondsia chinensis HOM05D001276 ORTHO05D001085 2.0e-06 55.8 37 75.7
unitig_8.g3084 Utricularia gibba HOM05D000084 ORTHO05D000363 2.0e-06 55.8 37 78.4
GSVIVG01021969001 Vitis vinifera HOM05D001276 ORTHO05D001085 2.0e-06 55.8 77 45.5
Migut.G00218 Erythranthe guttata HOM05D001276 ORTHO05D001085 2.6e-06 55.5 38 71.1
Glyma.19G240100 Glycine max HOM05D001276 ORTHO05D001085 2.6e-06 55.5 39 71.8
Gohir.A09G233100 Gossypium hirsutum HOM05D001276 ORTHO05D001085 2.6e-06 55.5 38 71.1
Gohir.D09G234200 Gossypium hirsutum HOM05D001276 ORTHO05D001085 2.6e-06 55.5 38 71.1
Gorai.006G257100 Gossypium raimondii HOM05D001276 ORTHO05D001085 2.6e-06 55.5 38 71.1
Peaxi162Scf01067g00112 Petunia axillaris HOM05D001276 ORTHO05D001085 2.6e-06 55.5 66 50.0
PGR031G0496 Punica granatum HOM05D001276 ORTHO05D001085 2.6e-06 55.5 41 70.7
PGR119G0589 Punica granatum HOM05D001276 ORTHO05D001085 2.6e-06 55.5 68 48.5
MSTRG.24775 Avicennia marina HOM05D001276 ORTHO05D001085 3.4e-06 55.1 38 71.1
Duzib212G0858 Durio zibethinus HOM05D001276 ORTHO05D001085 3.4e-06 55.1 38 71.1
ECA233G5093 Erigeron canadensis HOM05D001276 ORTHO05D001085 3.4e-06 55.1 38 71.1
Migut.N00124 Erythranthe guttata HOM05D001276 ORTHO05D001085 3.4e-06 55.1 37 73.0
Eucgr.H03757 Eucalyptus grandis HOM05D001276 ORTHO05D001085 3.4e-06 55.1 37 73.0
Eucgr.H03763 Eucalyptus grandis HOM05D001276 ORTHO05D001085 3.4e-06 55.1 37 73.0
Gohir.A13G100800 Gossypium hirsutum HOM05D001276 ORTHO05D001085 3.4e-06 55.1 39 69.2
Lj3A811T82 Lonicera japonica HOM05D001276 ORTHO05D001085 3.4e-06 55.1 39 69.2
MD13G1174500 Malus domestica HOM05D001276 ORTHO05D001085 3.4e-06 55.1 39 66.7
RcHm_v2.0_Chr4g0420871 Rosa chinensis HOM05D001276 ORTHO05D001085 3.4e-06 55.1 39 66.7
SalBow2G3166 Salvia bowleyana HOM05D001276 ORTHO05D001085 3.4e-06 55.1 38 73.7
SGA_v2.0_scaffold57G20260 Striga asiatica HOM05D001276 ORTHO05D001085 3.4e-06 55.1 37 73.0
ATR0582G065 Amborella trichopoda HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 68.4
Aqoxy3G01847 Aquilegia oxysepala HOM05D001276 ORTHO05D001085 4.5e-06 54.7 37 70.3
arahy.Tifrunner.gnm1.ann1.X0XPJN Arachis hypogaea HOM05D001276 ORTHO05D001085 4.5e-06 54.7 70 44.3
MSTRG.3958 Avicennia marina HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 71.1
CSS0042766 Camellia sinensis var. sinensis HOM05D001276 ORTHO05D001085 4.5e-06 54.7 69 47.8
CANSAT54G2770 Cannabis sativa HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 71.8
Cfa009432 Carpinus fangiana HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 66.7
CiPaw.05G103100 Carya illinoinensis HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 68.4
CiPaw.06G108200 Carya illinoinensis HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 68.4
Ca_21552_v3 Cicer arietinum L. HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 69.2
Haze_12483 Corylus avellana HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 66.7
Dinv11224 Davidia involucrata HOM05D001276 ORTHO05D001085 4.5e-06 54.7 68 48.5
Duzib052G0874 Durio zibethinus HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 71.8
Eucgr.H03739 Eucalyptus grandis HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 73.7
FAN05G3202 Fragaria x ananassa HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 69.2
Lsat_1_v5_gn_6_16040 Lactuca sativa HOM05D001276 ORTHO05D001085 4.5e-06 54.7 37 73.0
Lj5A89T43 Lonicera japonica HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 69.2
Nitab4.5_0002794g0060 Nicotiana tabacum HOM05D001276 ORTHO05D001085 4.5e-06 54.7 66 50.0
Sc19g0004920 Simmondsia chinensis HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 71.1
PGSC0003DMG400010661 Solanum tuberosum HOM05D001276 ORTHO05D001085 4.5e-06 54.7 65 49.2
SGA_v2.0_scaffold142G35680 Striga asiatica HOM05D001276 ORTHO05D001085 4.5e-06 54.7 37 73.0
Thecc.04G276300 Theobroma cacao HOM05D001276 ORTHO05D001085 4.5e-06 54.7 37 73.0
Thecc.05G254000 Theobroma cacao HOM05D001276 ORTHO05D001085 4.5e-06 54.7 39 66.7
GSVIVG01017817001 Vitis vinifera HOM05D001276 ORTHO05D001085 4.5e-06 54.7 38 71.1
CSS0013626 Camellia sinensis var. sinensis HOM05D001276 ORTHO05D001085 5.9e-06 54.3 39 66.7
CSS0033984 Camellia sinensis var. sinensis HOM05D001276 ORTHO05D001085 5.9e-06 54.3 39 66.7
CiPaw.01G153800 Carya illinoinensis HOM05D001276 ORTHO05D001085 5.9e-06 54.3 38 71.1
CiPaw.02G087000 Carya illinoinensis HOM05D001276 ORTHO05D001085 5.9e-06 54.3 38 71.1
Ciclev10006180m.g Citrus clementina HOM05D001276 ORTHO05D001085 5.9e-06 54.3 39 69.2
DCAR_002438 Daucus carota HOM05D001276 ORTHO05D001085 5.9e-06 54.3 38 68.4
DCAR_030568 Daucus carota HOM05D001276 ORTHO05D001085 5.9e-06 54.3 38 68.4
Eucgr.H03474 Eucalyptus grandis HOM05D001276 ORTHO05D001085 5.9e-06 54.3 37 73.0
MD12G1231000 Malus domestica HOM05D001276 ORTHO05D001085 5.9e-06 54.3 37 70.3
Manes.03G190600 Manihot esculenta HOM05D001276 ORTHO05D001085 5.9e-06 54.3 65 53.8
Atru.chr11.2418 Acer truncatum HOM05D001276 ORTHO05D001085 7.7e-06 53.9 39 66.7
Duzib151G0162 Durio zibethinus HOM05D001276 ORTHO05D001085 7.7e-06 53.9 39 71.8
FvH4_5g09190 Fragaria vesca HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 47.8
FAN04G0631 Fragaria x ananassa HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 47.8
FAN08G0273 Fragaria x ananassa HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 47.8
FAN13G0858 Fragaria x ananassa HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 47.8
FAN18G0993 Fragaria x ananassa HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 47.8
MBI11_g43869_MAGBIO Magnolia biondii HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 49.3
Manes.08G125600 Manihot esculenta HOM05D001276 ORTHO05D001085 7.7e-06 53.9 38 71.1
RcHm_v2.0_Chr7g0188991 Rosa chinensis HOM05D001276 ORTHO05D001085 7.7e-06 53.9 69 47.8
SGA_v2.0_scaffold89G27556 Striga asiatica HOM05D001276 ORTHO05D001085 7.7e-06 53.9 38 65.8


User provided reference genes

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