Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 2.9e-85 318.5 165 100.0
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 3.1e-58 228.8 175 74.9
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 1.6e-54 216.5 178 70.2
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 1.4e-47 193.4 184 60.9
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 6.6e-45 184.5 177 63.3
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.1e-39 167.2 182 56.6
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 2.1e-35 152.9 180 51.7
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 2.8e-35 152.5 206 48.5
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 4.7e-35 151.8 191 52.4
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 1.4e-34 150.2 185 47.6
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 3.1e-34 149.1 170 51.2
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 6.9e-34 147.9 199 47.2
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 6.9e-34 147.9 231 43.7
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 7.6e-33 144.4 188 47.9
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 9.9e-33 144.1 188 47.9
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 1.4e-31 140.2 217 43.8
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 5.4e-31 138.3 190 45.8
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 2.7e-30 136.0 212 41.0
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 2.3e-29 132.9 231 40.7
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.8e-27 125.9 210 40.5
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 3.6e-27 125.6 207 39.6
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 2.4e-26 122.9 176 44.3
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.2e-25 120.6 190 43.2
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.5e-25 120.2 190 43.2
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 7.6e-25 117.9 185 44.3
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 8.4e-24 114.4 184 42.9
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 8.4e-24 114.4 171 48.5
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 8.4e-24 114.4 163 46.0
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 1.1e-23 114.0 198 43.4
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 5.4e-23 111.7 178 39.3
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 5.4e-23 111.7 189 41.3
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.1e-22 109.8 190 40.0
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 4.6e-22 108.6 185 42.2
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 6.0e-22 108.2 184 42.9
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.9e-21 105.5 198 41.9
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 5.1e-21 105.1 177 43.5
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.5e-20 103.6 192 40.1
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.9e-20 103.2 191 38.7
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 7.4e-20 101.3 198 38.9
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 2.4e-18 96.3 105 50.5
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 3.1e-18 95.9 183 39.9
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 4.0e-18 95.5 186 41.4
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 6.9e-18 94.7 193 36.8
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.2e-17 94.0 177 39.5
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 1.2e-17 94.0 194 38.7
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 3.4e-17 92.4 194 39.7
Ca_09865_v3 Cicer arietinum L. HOM05D007526 ORTHO05D009350 7.6e-17 91.3 151 41.7
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 2.9e-16 89.4 174 37.9
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 8.4e-16 87.8 195 35.9
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 4.2e-15 85.5 202 35.6
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.2e-14 84.0 176 37.5
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 2.1e-14 83.2 185 35.7
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 4.6e-14 82.0 182 33.0
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 6.0e-14 81.6 186 31.7
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 6.0e-14 81.6 184 39.1
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 5.1e-13 78.6 194 32.5
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 1.1e-12 77.4 205 33.2
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.9e-12 76.6 192 33.3
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 2.5e-12 76.3 221 31.7
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 4.3e-12 75.5 185 34.1
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 5.6e-12 75.1 182 36.3
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 9.6e-12 74.3 192 32.3
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 1.3e-11 73.9 228 28.9
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 2.1e-11 73.2 184 32.6
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 2.1e-11 73.2 229 29.3
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 2.1e-11 73.2 186 30.6
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 4.8e-11 72.0 201 29.9
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.1e-10 70.9 200 31.0
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 2.4e-10 69.7 197 30.5
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 3.1e-10 69.3 205 27.8
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 5.3e-10 68.6 195 30.8
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 9.0e-10 67.8 197 30.5
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.5e-09 67.0 188 29.8
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.0e-09 66.6 195 30.3
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 2.0e-09 66.6 200 30.5
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.0e-09 66.6 201 29.4
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 2.6e-09 66.2 196 28.6
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 4.5e-09 65.5 94 46.8
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 5.8e-09 65.1 181 31.5
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.0e-08 64.3 190 27.9
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.0e-08 64.3 195 33.8
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 1.0e-08 64.3 180 30.6
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 1.7e-08 63.5 204 28.4
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 2.2e-08 63.2 177 35.0
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 2.9e-08 62.8 225 28.0
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 3.8e-08 62.4 221 28.5
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 6.5e-08 61.6 203 25.6
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 6.5e-08 61.6 203 25.6
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 6.5e-08 61.6 63 54.0
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.1e-07 60.8 204 26.5
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 1.1e-07 60.8 161 31.1
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 1.4e-07 60.5 171 31.0
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 2.5e-07 59.7 189 28.0
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 3.2e-07 59.3 175 31.4
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 4.2e-07 58.9 200 27.5
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 5.5e-07 58.5 50 56.0
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 5.5e-07 58.5 163 28.8
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 7.1e-07 58.2 165 32.7
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 7.1e-07 58.2 183 27.9
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 1.2e-06 57.4 154 30.5
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 1.6e-06 57.0 176 26.1
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 2.1e-06 56.6 72 43.1
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 2.1e-06 56.6 178 27.5
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 2.7e-06 56.2 178 27.0
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 3.5e-06 55.8 189 25.4
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 6.0e-06 55.1 80 40.0
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 6.0e-06 55.1 228 26.3


User provided reference genes

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