Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.8e-46 187.2 94 100.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 4.6e-43 177.6 94 94.7
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.1e-39 166.4 94 87.2
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 9.3e-36 153.3 99 78.8
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 6.4e-29 130.6 86 77.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 8.4e-29 130.2 100 69.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.2e-27 126.3 102 66.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.1e-25 119.8 94 70.2
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.3e-23 110.9 86 68.6
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 7.6e-22 107.1 97 64.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.0e-21 106.7 98 64.3
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.3e-21 106.3 98 63.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.9e-21 104.4 94 64.9
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 4.9e-21 104.4 103 61.2
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.4e-21 103.6 99 63.6
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-20 102.8 98 61.2
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.4e-20 102.8 92 59.8
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.9e-20 102.4 100 58.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.9e-20 102.4 105 58.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.9e-20 102.4 98 60.2
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.2e-20 101.3 100 59.0
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 5.5e-20 100.9 90 63.3
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.2e-19 99.8 105 56.2
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.7e-19 98.6 100 57.0
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.7e-19 98.6 86 67.4
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-19 98.2 98 60.2
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.5e-19 98.2 98 60.2
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.6e-19 97.8 99 56.6
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.6e-19 97.8 110 51.8
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.6e-19 97.8 100 57.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.6e-19 97.8 100 57.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 4.6e-19 97.8 113 53.1
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 6.0e-19 97.4 97 60.8
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.0e-19 97.4 96 55.2
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 6.0e-19 97.4 96 55.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.0e-19 97.4 96 55.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.0e-18 96.7 112 56.2
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.3e-18 96.3 113 55.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-18 96.3 100 59.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.0e-18 95.1 109 56.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 3.9e-18 94.7 103 54.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.9e-18 94.7 85 62.4
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.9e-18 94.7 93 61.3
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 5.1e-18 94.4 91 56.0
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.1e-17 93.2 97 54.6
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-17 92.8 104 55.8
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.9e-17 92.4 91 59.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-17 92.4 84 63.1
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.5e-17 92.0 93 58.1
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.5e-17 92.0 85 60.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.3e-17 91.7 89 57.3
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.3e-17 91.3 86 55.8
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.7e-17 90.9 98 58.2
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.4e-17 90.5 100 56.0
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 7.4e-17 90.5 94 55.3
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.3e-16 89.7 101 52.5
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.6e-16 89.4 90 60.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.2e-16 89.0 94 55.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.8e-16 88.6 99 51.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.7e-16 88.2 79 58.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 3.7e-16 88.2 99 52.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.7e-16 88.2 91 58.2
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 4.8e-16 87.8 97 52.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 6.3e-16 87.4 100 53.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 6.3e-16 87.4 88 61.4
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.3e-16 87.4 92 59.8
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 8.2e-16 87.0 101 55.4
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 8.2e-16 87.0 92 60.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.2e-16 87.0 103 54.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-15 86.3 83 57.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.8e-15 85.9 91 57.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.8e-15 85.9 94 51.1
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 2.4e-15 85.5 94 53.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.1e-15 85.1 86 58.1
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.1e-15 84.7 89 55.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.1e-15 84.7 99 57.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.1e-15 84.7 96 49.0
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.3e-15 84.3 92 52.2
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.3e-15 84.3 92 54.3
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 5.3e-15 84.3 94 59.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.3e-15 84.3 100 55.0
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.3e-15 84.3 92 57.6
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.9e-15 84.0 92 54.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.9e-15 84.0 109 55.0
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 6.9e-15 84.0 98 48.0
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.9e-15 84.0 88 60.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 9.0e-15 83.6 92 52.2
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.5e-14 82.8 99 50.5
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.0e-14 82.4 99 49.5
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.0e-14 82.4 91 56.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.0e-14 82.4 97 54.6
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.0e-14 82.4 108 47.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.0e-14 82.4 100 50.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.6e-14 82.0 97 57.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-14 82.0 97 50.5
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.6e-14 82.0 97 53.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.6e-14 82.0 101 50.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.4e-14 81.6 95 55.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.4e-14 81.6 102 49.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.4e-14 81.6 79 57.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.4e-14 81.6 104 47.1
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.4e-14 81.6 95 50.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 4.5e-14 81.3 86 54.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.5e-14 81.3 93 52.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.9e-14 80.9 97 49.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.0e-13 80.1 90 53.3
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.3e-13 79.7 89 52.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.3e-13 79.7 98 50.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.3e-13 79.7 98 46.9
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-13 79.7 91 54.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-13 79.3 97 48.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.9e-13 78.6 90 53.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.9e-13 78.6 93 50.5
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.5e-13 77.4 92 52.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.5e-13 77.0 93 54.8
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.1e-12 76.6 94 48.9
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.1e-12 76.6 94 48.9
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.4e-12 76.3 95 52.6
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-12 76.3 94 54.3
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.4e-12 76.3 93 51.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.9e-12 75.9 98 48.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.5e-12 75.5 102 51.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.5e-12 75.5 99 49.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.5e-12 75.5 89 51.7
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.2e-12 74.7 96 54.2
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.2e-12 74.7 104 47.1
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 5.5e-12 74.3 122 42.6
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.5e-12 74.3 122 45.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.5e-12 74.3 122 45.9
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.5e-12 74.3 100 50.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.2e-11 73.2 89 50.6
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.2e-11 73.2 89 49.4
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.6e-11 72.8 83 53.0
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.1e-11 72.4 108 47.2
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 3.6e-11 71.6 95 50.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.6e-11 71.6 91 46.2
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 4.6e-11 71.2 95 50.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 6.1e-11 70.9 103 45.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 6.1e-11 70.9 93 50.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 7.9e-11 70.5 103 45.6
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-10 70.1 103 46.6
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.4e-10 69.7 93 46.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 3.0e-10 68.6 101 49.5
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.1e-10 67.8 83 51.8
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 5.1e-10 67.8 81 50.6
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 5.1e-10 67.8 93 49.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 5.1e-10 67.8 91 48.4
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.7e-10 67.4 88 46.6
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-09 66.6 83 50.6
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.1e-09 66.6 90 50.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-09 66.2 103 43.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-09 66.2 103 43.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.5e-09 66.2 103 43.7
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-09 66.2 83 51.8
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.5e-09 65.5 83 50.6
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.3e-09 64.7 83 50.6
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.3e-09 64.7 84 51.2
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.7e-09 64.3 107 41.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 5.7e-09 64.3 86 52.3
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 5.7e-09 64.3 96 45.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 7.4e-09 63.9 90 47.8
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.4e-09 63.9 116 39.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 9.7e-09 63.5 78 51.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 9.7e-09 63.5 78 51.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 9.7e-09 63.5 83 49.4
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 9.7e-09 63.5 83 49.4
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 9.7e-09 63.5 111 42.3
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.3e-08 63.2 83 50.6
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.7e-08 62.8 97 42.3
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.8e-08 62.0 83 42.2
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 3.7e-08 61.6 96 42.7
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 8.2e-08 60.5 79 45.6
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 2.4e-07 58.9 74 47.3
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.2e-06 56.6 111 36.9
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.2e-06 56.6 81 46.9
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 5.9e-06 54.3 75 48.0


User provided reference genes

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