Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 6.5e-58 227.3 121 100.0
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 1.0e-42 176.8 121 76.0
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 1.0e-42 176.8 121 79.3
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 4.2e-41 171.4 119 76.5
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 1.5e-38 162.9 119 72.3
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 1.7e-37 159.5 119 71.4
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 5.4e-36 154.5 121 67.8
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 9.2e-36 153.7 100 78.0
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 2.3e-34 149.1 119 66.4
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 6.6e-34 147.5 119 68.1
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 5.6e-33 144.4 119 58.8
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 2.1e-32 142.5 121 63.6
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 4.7e-32 141.4 121 62.8
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 5.2e-31 137.9 122 61.5
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 6.8e-31 137.5 119 58.0
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 2.0e-30 136.0 119 58.8
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 7.5e-30 134.0 119 58.0
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 9.8e-30 133.7 119 52.9
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 1.3e-29 133.3 106 61.3
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 3.7e-29 131.7 106 60.4
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 4.9e-29 131.3 119 55.5
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 6.4e-29 131.0 119 56.3
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 3.2e-28 128.6 120 56.7
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 3.2e-28 128.6 107 60.7
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 4.1e-28 128.3 120 54.2
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 4.1e-28 128.3 119 58.0
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 9.2e-28 127.1 120 55.8
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 1.2e-27 126.7 110 58.2
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 1.6e-27 126.3 103 62.1
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.5e-27 125.2 103 62.1
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 4.6e-27 124.8 121 57.9
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 1.3e-26 123.2 119 51.3
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.7e-26 122.9 96 64.6
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 6.6e-26 120.9 123 56.1
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 2.5e-25 119.0 119 51.3
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 3.3e-25 118.6 113 58.4
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 4.3e-25 118.2 119 52.1
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 5.6e-25 117.9 122 54.1
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 7.3e-25 117.5 112 54.5
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 1.6e-24 116.3 119 50.4
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 1.0e-23 113.6 116 55.2
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 1.8e-23 112.8 99 61.6
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 8.9e-23 110.5 109 52.3
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 1.2e-22 110.2 112 54.5
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 1.2e-22 110.2 119 45.4
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 1.5e-22 109.8 111 54.1
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 2.0e-22 109.4 122 48.4
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 5.8e-22 107.8 120 50.8
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 7.5e-22 107.5 101 51.5
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 7.5e-22 107.5 99 56.6
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 7.5e-22 107.5 95 57.9
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 9.8e-22 107.1 111 55.0
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 1.3e-21 106.7 91 61.5
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 1.3e-21 106.7 91 61.5
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 1.7e-21 106.3 92 57.6
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 2.9e-21 105.5 91 60.4
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 2.9e-21 105.5 111 52.3
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 4.9e-21 104.8 98 56.1
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 4.9e-21 104.8 98 56.1
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 4.9e-21 104.8 95 51.6
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 4.9e-21 104.8 91 60.4
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 4.9e-21 104.8 119 44.5
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 8.3e-21 104.0 91 59.3
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 8.3e-21 104.0 91 59.3
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 8.3e-21 104.0 121 49.6
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 8.3e-21 104.0 120 47.5
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 1.1e-20 103.6 118 49.2
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 1.1e-20 103.6 94 53.2
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 1.4e-20 103.2 121 45.5
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 4.1e-20 101.7 111 51.4
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 5.4e-20 101.3 95 54.7
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 5.4e-20 101.3 112 43.8
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 7.0e-20 100.9 112 43.8
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 2.7e-19 99.0 97 50.5
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 3.5e-19 98.6 101 46.5
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 4.6e-19 98.2 104 51.9
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 4.6e-19 98.2 117 47.9
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 4.6e-19 98.2 117 47.9
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 7.8e-19 97.4 120 46.7
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 3.0e-18 95.5 117 47.0
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 5.0e-18 94.7 113 46.9
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 1.1e-17 93.6 93 51.6
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 2.5e-17 92.4 121 43.8
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 4.3e-17 91.7 121 43.8
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 5.6e-17 91.3 112 47.3
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 2.1e-16 89.4 102 46.1
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 4.0e-15 85.1 89 52.8
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.2e-14 83.6 76 53.9
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 1.5e-14 83.2 93 49.5
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.6e-14 82.4 77 51.9
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 2.6e-14 82.4 81 51.9
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 4.4e-14 81.6 97 44.3
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 7.5e-14 80.9 77 50.6
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 7.5e-14 80.9 77 50.6
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 9.8e-14 80.5 77 50.6
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 4.9e-13 78.2 96 42.7
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 6.0e-11 71.2 102 44.1
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 1.7e-10 69.7 89 44.9
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.0e-10 68.9 63 57.1
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 6.6e-10 67.8 74 45.9
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 5.6e-09 64.7 83 41.0
arahy.Tifrunner.gnm1.ann1.65RZ9M Arachis hypogaea HOM05D007246 ORTHO05D009066 1.8e-07 59.7 69 52.2
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 4.0e-07 58.5 51 52.9
Peaxi162Scf17552g00001 Petunia axillaris HOM05D007246 ORTHO05D009066 8.9e-07 57.4 63 47.6
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 1.2e-06 57.0 76 40.8
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 1.2e-06 57.0 76 40.8
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 2.6e-06 55.8 66 42.4
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 5.8e-06 54.7 99 36.4


User provided reference genes

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