Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 0.0e+00 1252.7 642 100.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 0.0e+00 1088.6 678 85.7
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 5.7e-270 934.1 661 76.6
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.4e-247 859.8 610 75.1
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 3.9e-226 788.5 663 66.4
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 2.5e-225 785.8 666 67.4
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.6e-219 766.5 662 64.5
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 7.1e-212 741.1 719 60.4
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.4e-207 726.9 640 64.8
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 4.4e-161 572.4 657 54.3
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.9e-144 516.5 651 51.5
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 1.2e-123 448.0 666 44.9
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 5.4e-119 432.6 586 49.3
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 5.1e-117 426.0 534 50.6
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 4.7e-115 419.5 595 47.2
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.0e-113 414.1 679 41.7
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 2.4e-111 407.1 600 45.7
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 7.1e-111 405.6 602 45.7
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 1.1e-108 398.3 701 41.9
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.1e-108 398.3 589 45.5
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 1.1e-108 398.3 602 45.5
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.9e-108 397.5 601 46.1
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 3.3e-108 396.7 676 42.6
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.3e-107 394.8 738 40.5
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 2.8e-107 393.7 712 40.0
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.9e-104 383.6 732 39.8
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 6.4e-104 382.5 689 42.2
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.1e-103 381.7 736 39.9
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 4.2e-103 379.8 719 40.3
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 8.7e-101 372.1 602 43.7
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 2.5e-100 370.5 692 40.6
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 4.3e-100 369.8 698 39.3
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.8e-99 367.1 676 41.0
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.1e-98 365.2 654 40.4
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 2.0e-97 360.9 684 40.6
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.9e-95 354.4 761 37.2
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 2.7e-94 350.5 683 39.5
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 6.0e-94 349.4 667 39.1
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 5.6e-92 342.8 703 39.0
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 3.1e-90 337.0 731 36.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 6.5e-88 329.3 684 38.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.1e-87 328.6 761 36.0
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 3.5e-86 323.6 704 37.4
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 6.0e-86 322.8 651 39.3
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 3.9e-85 320.1 681 35.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 3.3e-84 317.0 600 40.7
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.8e-82 311.2 585 42.2
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 2.0e-81 307.8 584 39.4
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 9.3e-79 298.9 607 38.9
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 2.7e-78 297.4 832 34.0
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.9e-76 291.2 708 34.2
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.2e-73 282.0 664 36.7
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.5e-73 281.6 697 36.6
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.5e-73 281.6 632 37.0
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 2.2e-72 277.7 603 36.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 6.5e-72 276.2 684 34.2
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.1e-71 275.4 642 36.3
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 3.2e-71 273.9 615 35.6
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 3.2e-71 273.9 674 34.3
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.2e-71 273.5 747 35.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.0e-69 268.9 635 37.2
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.4e-69 268.5 656 36.9
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.9e-69 266.9 565 38.8
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.5e-68 265.0 627 36.7
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.4e-68 263.5 644 34.5
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.7e-67 261.5 664 35.7
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.8e-66 258.1 617 35.8
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 3.1e-66 257.3 293 54.9
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 4.1e-66 256.9 835 31.1
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 9.1e-66 255.8 476 40.5
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 3.4e-65 253.8 594 37.9
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 4.5e-65 253.4 591 36.4
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.3e-64 251.9 804 31.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.2e-63 246.9 653 35.5
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 9.4e-63 245.7 610 35.2
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.4e-61 241.9 609 35.0
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 3.0e-61 240.7 499 40.3
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 6.7e-61 239.6 665 33.7
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.7e-61 239.6 642 33.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.0e-60 238.0 643 35.1
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.8e-59 234.2 689 34.0
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 2.9e-56 224.2 577 35.7
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 1.9e-55 221.5 630 34.3
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 9.4e-55 219.2 519 37.0
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 9.4e-55 219.2 526 32.9
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 4.7e-54 216.9 596 36.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 8.0e-54 216.1 602 32.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 2.3e-53 214.5 521 37.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 3.0e-53 214.2 675 32.9
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 8.8e-53 212.6 652 31.7
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.0e-52 211.5 509 37.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.6e-52 211.1 499 38.3
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 2.2e-51 208.0 520 33.5
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.6e-49 201.8 557 32.7
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 5.5e-47 193.4 556 32.4
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.0e-45 189.1 545 31.4
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.4e-45 188.7 543 33.7
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 3.0e-45 187.6 635 30.4
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 5.7e-44 183.3 353 36.8
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 6.3e-43 179.9 531 32.8
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 8.3e-43 179.5 533 31.3
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 8.3e-43 179.5 533 31.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 8.3e-43 179.5 542 32.3
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.1e-42 177.6 536 32.1
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 5.4e-42 176.8 564 31.4
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 7.0e-42 176.4 561 31.0
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 8.6e-40 169.5 540 30.9
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 5.5e-39 166.8 539 30.4
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 5.5e-39 166.8 539 30.4
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.4e-37 162.2 521 30.3
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.3e-37 161.4 733 27.3
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 3.4e-36 157.5 540 31.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 5.7e-36 156.8 640 29.2
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.3e-35 155.6 547 30.7
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 7.8e-33 146.4 653 27.3
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 1.0e-32 146.0 351 38.7
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.9e-32 144.4 390 30.8
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 2.9e-27 127.9 512 29.5
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.4e-26 124.8 304 35.5
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 9.2e-26 122.9 649 27.6
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.3e-24 119.0 208 41.8
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 2.3e-24 118.2 294 37.8
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 3.9e-24 117.5 589 27.7
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.3e-16 91.7 169 42.6
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.6e-14 85.5 363 30.0
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 3.2e-10 71.2 403 24.8
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 2.5e-07 61.6 349 27.2
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 4.7e-06 57.4 77 48.1
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 8.1e-06 56.6 106 39.6


User provided reference genes

Program Settings