Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 5.9e-112 407.5 204 100.0
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.5e-91 339.7 204 86.3
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 5.8e-91 337.8 205 86.8
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 1.4e-89 333.2 204 84.3
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.8e-76 289.7 213 72.3
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 8.9e-76 287.3 213 75.1
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 9.9e-75 283.9 207 75.8
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.9e-73 279.6 207 73.9
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 2.4e-73 279.3 179 83.2
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.1e-70 270.4 152 89.5
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 2.5e-70 269.2 203 72.4
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 7.3e-70 267.7 207 69.6
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 2.1e-69 266.2 210 66.2
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 2.0e-67 259.6 184 71.7
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 5.8e-67 258.1 196 68.4
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 7.6e-67 257.7 174 75.3
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.1e-65 253.8 174 74.1
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 5.4e-65 251.5 177 72.3
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 9.3e-65 250.8 151 80.8
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.2e-64 250.4 188 69.1
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 6.0e-64 248.1 167 74.3
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.0e-63 247.3 152 77.0
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.3e-63 246.9 202 65.3
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 3.0e-63 245.7 167 73.7
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 3.0e-63 245.7 151 78.1
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 3.9e-63 245.4 184 69.6
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 5.1e-63 245.0 184 69.0
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.1e-62 243.8 151 77.5
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.5e-62 243.4 167 71.9
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.9e-62 243.0 207 62.8
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 2.5e-62 242.7 207 65.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 4.3e-62 241.9 202 63.9
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 5.6e-62 241.5 151 76.8
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 5.6e-62 241.5 187 68.4
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 1.3e-61 240.4 177 67.8
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.8e-61 239.2 184 67.9
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.1e-60 237.3 161 73.3
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 2.4e-60 236.1 149 78.5
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 9.0e-60 234.2 180 68.9
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-59 233.4 198 63.1
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-59 233.4 198 63.1
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-59 233.0 198 63.1
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.6e-59 232.6 146 76.0
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 2.6e-59 232.6 190 63.2
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.4e-59 232.3 198 62.6
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.8e-59 231.5 146 76.0
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 7.6e-59 231.1 172 63.4
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.6e-59 231.1 202 62.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 7.6e-59 231.1 154 74.7
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 9.9e-59 230.7 210 63.3
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 9.9e-59 230.7 195 62.1
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.7e-58 229.9 175 65.1
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 3.8e-58 228.8 184 61.4
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 6.4e-58 228.0 178 66.9
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 8.4e-58 227.6 147 75.5
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.4e-57 226.9 148 73.6
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 3.2e-57 225.7 146 73.3
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 9.3e-57 224.2 151 69.5
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 9.3e-57 224.2 148 70.9
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 2.1e-56 223.0 148 70.9
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.1e-56 223.0 170 65.9
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.7e-56 222.6 170 65.9
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 3.5e-56 222.2 181 60.8
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 3.5e-56 222.2 148 69.6
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 4.6e-56 221.9 148 70.3
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 4.6e-56 221.9 147 73.5
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 6.0e-56 221.5 151 68.2
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.0e-55 220.7 203 59.6
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 1.8e-55 219.9 151 67.5
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.8e-55 219.9 162 68.5
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 3.9e-55 218.8 207 55.1
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 5.1e-55 218.4 167 64.1
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.1e-54 217.2 170 64.7
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 2.5e-54 216.1 151 68.9
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 3.3e-54 215.7 147 68.7
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 4.3e-54 215.3 148 72.3
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 9.6e-54 214.2 148 68.9
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 9.6e-54 214.2 170 64.1
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 2.8e-53 212.6 205 59.5
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 6.2e-53 211.5 169 65.1
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 6.5e-50 201.4 176 61.9
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 1.3e-47 193.7 135 73.3
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 1.3e-47 193.7 128 72.7
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 1.8e-47 193.4 207 50.7
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 1.8e-47 193.4 140 71.4
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 5.7e-46 188.3 211 54.0
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 7.4e-46 188.0 232 47.8
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 9.6e-46 187.6 146 66.4
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 2.9e-42 176.0 142 64.1
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 7.2e-41 171.4 113 74.3
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 3.6e-40 169.1 148 54.1
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.3e-39 167.2 183 53.0
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.8e-39 166.8 158 50.0
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.8e-39 166.8 158 50.0
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.9e-33 146.7 87 80.5
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 8.8e-31 137.9 182 40.7
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 1.7e-29 133.7 152 43.4
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 3.1e-28 129.4 140 52.9
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 2.7e-24 116.3 113 53.1
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 2.6e-22 109.8 182 34.6
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 4.1e-20 102.4 72 69.4
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 1.4e-15 87.4 139 31.7
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.2e-14 84.3 149 34.2
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.3e-14 82.8 108 47.2
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.2e-13 80.1 173 36.4
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 7.0e-12 75.1 135 28.9
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.0e-10 71.2 172 31.4
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 1.5e-09 67.4 48 70.8
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.5e-09 65.5 43 58.1
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 9.4e-09 64.7 103 48.5
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 8.0e-08 61.6 44 65.9
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 1.4e-07 60.8 31 90.3
Lalb_Chr21g0313491 Lupinus albus HOM05D007188 ORTHO05D009102 8.8e-07 58.2 28 92.9
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 4.4e-06 55.8 39 69.2


User provided reference genes

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