Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 3.1e-211 738.4 437 100.0
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 3.1e-182 642.1 437 83.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 5.2e-174 614.8 401 85.3
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 8.1e-167 590.9 438 76.9
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 6.9e-166 587.8 439 77.9
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 4.2e-163 578.6 435 76.8
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 5.6e-160 568.2 433 75.1
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.3e-159 567.0 441 74.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 1.2e-157 560.5 433 75.3
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 8.1e-151 537.7 438 72.4
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 2.2e-135 486.5 443 67.7
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 7.9e-130 468.0 442 64.5
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 5.3e-126 455.3 442 63.6
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 2.0e-125 453.4 481 59.0
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 3.4e-125 452.6 463 61.3
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 3.4e-125 452.6 460 63.5
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 5.9e-125 451.8 466 59.7
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 5.9e-125 451.8 435 63.0
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 7.7e-125 451.4 439 62.4
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.3e-124 450.7 435 63.0
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.2e-124 449.9 466 59.0
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 5.0e-124 448.7 435 62.5
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.5e-123 446.4 465 59.4
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 4.2e-123 445.7 455 60.9
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.6e-122 442.6 464 59.3
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.9e-122 441.4 465 59.4
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.0e-121 441.0 471 59.9
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-120 436.8 434 62.7
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 7.0e-118 428.3 434 61.5
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.0e-117 426.8 466 59.7
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.5e-116 421.8 442 60.0
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 7.2e-115 418.3 459 60.1
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 2.7e-114 416.4 458 59.0
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.4e-113 414.1 438 63.5
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 2.8e-111 406.4 436 60.8
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 4.8e-111 405.6 438 60.5
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 1.7e-108 397.1 460 55.7
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.2e-107 392.9 439 56.0
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.7e-106 389.0 443 56.7
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 4.7e-106 389.0 469 55.0
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.8e-105 387.1 351 66.7
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.7e-104 382.1 443 56.7
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.3e-100 370.9 440 55.2
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.7e-100 370.5 468 54.3
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.7e-100 370.5 441 54.9
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 2.2e-100 370.2 445 55.7
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 5.0e-100 369.0 446 54.5
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.1e-99 367.9 440 53.6
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 5.5e-99 365.5 453 54.7
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 9.4e-99 364.8 446 53.8
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 9.4e-99 364.8 446 53.8
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.6e-98 364.0 436 55.3
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 2.1e-98 363.6 436 53.9
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 8.0e-98 361.7 436 55.0
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.4e-97 360.9 434 54.4
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-97 360.1 449 53.2
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 5.2e-97 359.0 441 53.3
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.5e-96 357.5 441 54.2
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.7e-95 354.0 443 53.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 6.3e-95 352.1 483 49.5
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.8e-94 350.5 362 60.5
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 2.4e-94 350.1 423 53.7
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 7.0e-94 348.6 437 52.6
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 1.2e-93 347.8 427 52.7
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.6e-93 347.4 465 51.2
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 2.7e-93 346.7 450 52.4
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.9e-93 345.5 436 52.1
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.7e-92 344.0 259 74.9
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 2.3e-92 343.6 435 52.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.3e-92 343.6 454 51.5
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 5.0e-92 342.4 478 50.8
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 6.1e-90 335.5 441 50.8
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 8.9e-89 331.6 441 51.0
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 8.9e-89 331.6 655 41.4
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 2.0e-88 330.5 434 53.2
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.6e-88 330.1 428 52.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.3e-87 327.8 442 52.3
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.2e-87 327.0 424 52.4
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 8.3e-87 325.1 430 53.0
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.4e-86 323.6 428 52.1
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 7.0e-86 322.0 515 45.8
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 9.5e-83 311.6 439 49.0
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.8e-82 310.1 441 48.8
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.8e-81 307.4 432 46.1
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 6.8e-81 305.4 441 49.7
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 6.8e-81 305.4 462 47.2
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 3.4e-80 303.1 462 45.9
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.0e-76 291.6 250 62.0
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.3e-76 290.4 520 43.3
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 5.6e-75 285.8 461 46.6
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 7.3e-75 285.4 443 48.3
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 4.4e-72 276.2 430 47.2
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.9e-71 273.5 256 65.2
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.1e-69 267.3 459 43.8
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.3e-67 260.0 441 44.0
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 7.3e-67 258.8 467 43.3
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.4e-65 254.6 456 42.5
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 2.6e-64 250.4 250 56.4
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.3e-63 248.1 346 49.4
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.3e-63 248.1 459 41.2
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.6e-61 241.1 233 63.1
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 8.6e-60 235.3 258 58.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 1.9e-59 234.2 456 41.2
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 4.0e-57 226.5 353 45.6
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.7e-55 221.1 247 51.4
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.6e-53 214.5 444 40.5
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.6e-50 204.5 240 49.6
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.9e-47 193.0 160 68.8
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.3e-44 184.1 251 45.4
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 5.6e-43 179.5 374 39.8
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.1e-36 156.4 491 33.8
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 3.7e-34 150.2 246 40.2
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.9e-28 130.2 252 39.7
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.9e-27 127.9 169 52.1
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 5.5e-22 109.8 88 76.1
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 6.3e-18 96.3 93 59.1
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 6.3e-18 96.3 93 59.1
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.8e-17 94.7 190 41.1
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.1e-17 94.0 266 32.7
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 5.3e-17 93.2 63 77.8
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 5.3e-17 93.2 63 77.8
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.2e-15 87.8 49 89.8
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 7.9e-13 79.3 50 84.0
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 7.9e-13 79.3 164 40.2
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 8.8e-12 75.9 90 50.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.5e-11 74.3 153 39.9
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 6.3e-10 69.7 237 32.1
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.2e-08 65.5 66 54.5
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 5.0e-07 60.1 136 37.5


User provided reference genes

Program Settings