Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 2.4e-75 285.4 144 100.0
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 2.0e-69 265.8 144 93.8
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 1.6e-66 256.1 145 89.0
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 4.5e-66 254.6 145 88.3
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 2.8e-47 192.2 122 77.9
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 6.8e-46 187.6 123 74.8
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 2.6e-45 185.7 143 69.9
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 3.2e-43 178.7 143 66.4
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 9.2e-43 177.2 144 65.3
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 6.6e-41 171.0 141 64.5
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 2.5e-40 169.1 114 71.1
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 9.9e-37 157.1 98 76.5
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 1.3e-36 156.8 94 75.5
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 2.9e-36 155.6 202 46.0
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 5.4e-35 151.4 145 57.2
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 7.1e-35 151.0 145 54.5
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 2.1e-34 149.4 108 67.6
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 2.1e-34 149.4 125 63.2
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 2.7e-34 149.1 145 55.9
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 2.3e-33 146.0 103 70.9
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 3.0e-33 145.6 123 61.8
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.9e-33 145.2 98 69.4
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 3.9e-33 145.2 110 66.4
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 5.1e-33 144.8 132 59.1
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 6.6e-33 144.4 98 69.4
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 6.6e-33 144.4 132 59.8
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 8.6e-33 144.1 145 55.9
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 1.1e-32 143.7 102 65.7
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 1.1e-32 143.7 98 68.4
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 1.5e-32 143.3 121 62.0
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.9e-32 142.9 145 53.1
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.9e-32 142.9 145 53.1
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.9e-32 142.9 133 55.6
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 1.9e-32 142.9 122 59.8
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 2.5e-32 142.5 117 62.4
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 4.3e-32 141.7 149 53.0
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 5.6e-32 141.4 110 64.5
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 5.6e-32 141.4 117 62.4
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 7.3e-32 141.0 148 52.0
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 1.2e-31 140.2 105 68.6
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 1.6e-31 139.8 134 53.7
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 2.1e-31 139.4 103 65.0
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 2.1e-31 139.4 147 53.1
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 2.1e-31 139.4 117 59.0
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 2.1e-31 139.4 117 59.0
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 2.1e-31 139.4 109 65.1
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 2.8e-31 139.0 98 66.3
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 3.6e-31 138.7 122 58.2
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 6.2e-31 137.9 103 64.1
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 6.2e-31 137.9 106 65.1
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 6.2e-31 137.9 98 69.4
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 6.2e-31 137.9 122 59.0
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 1.1e-30 137.1 104 62.5
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.4e-30 136.7 98 65.3
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.4e-30 136.7 122 58.2
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 1.8e-30 136.3 122 58.2
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 3.1e-30 135.6 100 65.0
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 3.1e-30 135.6 101 63.4
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 4.0e-30 135.2 107 59.8
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 4.0e-30 135.2 98 66.3
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 5.2e-30 134.8 97 64.9
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 6.8e-30 134.4 109 60.6
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 6.8e-30 134.4 105 62.9
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 6.8e-30 134.4 107 62.6
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 8.9e-30 134.0 140 50.0
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 8.9e-30 134.0 117 58.1
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 1.2e-29 133.7 141 50.4
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 1.2e-29 133.7 117 58.1
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 2.0e-29 132.9 98 65.3
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 2.6e-29 132.5 107 61.7
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 3.4e-29 132.1 95 66.3
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 4.4e-29 131.7 111 56.8
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 5.8e-29 131.3 141 50.4
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 7.6e-29 131.0 98 64.3
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 1.3e-28 130.2 125 52.8
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 2.9e-28 129.0 117 57.3
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 2.9e-28 129.0 115 57.4
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 3.8e-28 128.6 125 53.6
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 6.4e-28 127.9 105 61.0
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 6.4e-28 127.9 105 61.0
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 6.4e-28 127.9 105 61.0
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 6.4e-28 127.9 104 58.7
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 8.4e-28 127.5 146 50.0
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 1.1e-27 127.1 106 58.5
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 1.4e-27 126.7 107 57.9
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 1.4e-27 126.7 107 57.9
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.4e-27 126.7 95 60.0
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 2.4e-27 125.9 146 50.0
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 2.4e-27 125.9 105 60.0
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 2.4e-27 125.9 158 46.2
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 3.2e-27 125.6 107 60.7
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 9.2e-27 124.0 104 56.7
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.2e-26 123.6 107 59.8
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 1.2e-26 123.6 106 57.5
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 2.7e-26 122.5 107 60.7
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 2.7e-26 122.5 114 47.4
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 3.5e-26 122.1 165 44.8
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 4.6e-26 121.7 127 50.4
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 5.1e-25 118.2 127 48.0
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 4.3e-24 115.2 98 57.1
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 5.6e-24 114.8 107 57.0
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 5.6e-24 114.8 121 48.8
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 2.8e-23 112.5 137 45.3
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 2.0e-21 106.3 183 37.2
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 6.4e-20 101.3 111 50.5
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 6.4e-20 101.3 79 60.8
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 4.2e-19 98.6 102 52.9
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 1.2e-18 97.1 73 65.8
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 2.3e-17 92.8 104 40.4
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 8.7e-17 90.9 62 71.0
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 2.5e-16 89.4 106 45.3
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 5.6e-16 88.2 54 75.9
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 1.3e-15 87.0 54 70.4
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 1.6e-15 86.7 61 63.9
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 4.0e-14 82.0 94 41.5
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 1.5e-13 80.1 97 41.2
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.5e-13 80.1 101 37.6
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 3.4e-13 79.0 54 72.2
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 1.1e-08 63.9 95 35.8
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 1.3e-07 60.5 90 33.3
Actinidia14692 Actinidia chinensis HOM05D001428 ORTHO05D001306 1.4e-06 57.0 133 35.3


User provided reference genes

Program Settings