Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 4.6e-166 587.8 294 100.0
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 8.5e-128 460.7 267 88.4
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.0e-100 369.8 275 72.4
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 1.6e-94 350.1 268 70.1
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 1.6e-70 270.4 272 60.3
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 1.6e-65 253.8 270 56.7
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 8.7e-64 248.1 270 56.3
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 1.9e-63 246.9 340 47.9
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 3.4e-60 236.1 340 46.8
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 1.3e-59 234.2 276 55.1
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 6.4e-59 231.9 265 56.6
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 1.8e-56 223.8 271 55.7
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 2.4e-53 213.4 296 50.0
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.6e-52 209.9 330 46.4
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.3e-51 207.6 270 49.6
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 7.1e-50 201.8 214 59.3
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 1.8e-48 197.2 328 45.1
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 3.0e-48 196.4 285 47.4
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 5.1e-48 195.7 285 47.4
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 2.5e-47 193.4 259 51.4
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.1e-45 188.0 276 46.7
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 6.9e-45 185.3 272 45.2
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 9.0e-45 184.9 281 44.8
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 1.2e-44 184.5 280 43.9
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 3.4e-44 183.0 269 45.4
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 1.7e-43 180.6 284 42.6
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 2.2e-43 180.3 293 42.0
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 1.1e-42 177.9 274 44.5
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 3.2e-42 176.4 273 42.5
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 3.5e-41 172.9 284 40.5
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 3.5e-41 172.9 193 49.2
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.0e-40 171.4 283 43.1
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 1.3e-40 171.0 266 43.2
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 5.1e-40 169.1 272 41.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.1e-39 167.9 278 41.7
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.1e-39 167.9 273 41.4
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 1.1e-39 167.9 255 44.3
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.3e-39 166.4 266 39.8
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 5.7e-39 165.6 281 40.9
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 5.7e-39 165.6 209 49.8
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 5.7e-39 165.6 279 40.5
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 5.7e-39 165.6 279 42.3
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 7.4e-39 165.2 269 39.8
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 2.1e-38 163.7 269 42.4
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.1e-38 163.7 272 40.4
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 2.8e-38 163.3 274 41.2
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 1.1e-37 161.4 278 42.4
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 1.4e-37 161.0 283 38.5
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.8e-37 160.6 280 41.1
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 1.8e-37 160.6 278 41.7
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 4.1e-37 159.5 349 34.4
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 6.9e-37 158.7 284 38.0
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 2.0e-36 157.1 276 42.0
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.6e-36 156.8 212 47.2
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 3.8e-35 152.9 143 57.3
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 3.8e-35 152.9 268 38.8
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 1.1e-34 151.4 266 38.3
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 1.4e-34 151.0 273 38.1
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 1.4e-34 151.0 301 39.9
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 5.5e-34 149.1 230 43.9
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 5.5e-34 149.1 276 40.6
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 7.2e-34 148.7 276 39.5
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 9.3e-34 148.3 324 36.7
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.6e-33 147.5 276 39.5
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 4.6e-33 146.0 282 38.3
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 6.1e-33 145.6 280 37.9
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 7.9e-33 145.2 232 42.7
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.0e-32 144.8 202 45.0
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 1.8e-32 144.1 210 42.4
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 2.3e-32 143.7 192 44.3
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 2.3e-32 143.7 278 37.1
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 3.0e-32 143.3 319 34.2
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 3.0e-32 143.3 279 39.8
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 3.9e-32 142.9 264 38.3
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 8.7e-32 141.7 282 36.5
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 1.1e-31 141.4 279 38.7
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 1.5e-31 141.0 264 37.9
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 1.9e-31 140.6 279 36.6
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 4.3e-31 139.4 279 35.8
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 5.7e-31 139.0 281 37.7
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 9.7e-31 138.3 239 38.1
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.3e-30 137.9 279 38.0
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 1.6e-30 137.5 239 38.1
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 1.6e-30 137.5 148 55.4
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 2.8e-30 136.7 236 40.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 2.8e-30 136.7 237 39.7
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 6.3e-30 135.6 270 35.2
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 3.1e-29 133.3 239 37.2
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 4.1e-29 132.9 275 36.0
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 9.1e-29 131.7 262 36.6
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.2e-28 131.3 191 44.0
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.2e-28 131.3 270 37.4
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 3.4e-28 129.8 189 41.8
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 3.4e-28 129.8 248 37.9
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 4.5e-28 129.4 224 39.3
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 4.5e-28 129.4 198 40.4
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 5.9e-28 129.0 189 41.8
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 7.7e-28 128.6 275 35.6
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 7.7e-28 128.6 216 38.9
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-27 127.9 224 38.4
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.7e-27 127.5 218 39.0
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 2.2e-27 127.1 188 40.4
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.2e-27 127.1 157 45.9
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 2.9e-27 126.7 188 39.9
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.9e-26 124.0 214 41.1
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 4.2e-26 122.9 319 32.9
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 4.2e-26 122.9 273 35.5
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 4.2e-26 122.9 235 35.7
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 7.2e-26 122.1 224 37.9
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 7.2e-26 122.1 224 37.9
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.6e-25 120.9 266 32.7
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.6e-25 120.9 142 47.2
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 6.1e-25 119.0 270 33.3
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 3.0e-24 116.7 234 36.8
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 1.5e-23 114.4 240 32.9
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 6.3e-22 109.0 190 40.5
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 2.4e-21 107.1 174 37.4
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 4.1e-21 106.3 136 43.4
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 5.3e-21 105.9 189 40.2
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.0e-19 101.7 125 43.2
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 1.1e-18 98.2 198 36.9
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 5.5e-18 95.9 98 51.0
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 5.5e-18 95.9 135 41.5
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 7.2e-18 95.5 168 35.1
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 7.2e-18 95.5 153 35.3
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-17 94.7 212 31.1
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 1.6e-17 94.4 115 42.6
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 1.6e-17 94.4 115 42.6
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 2.7e-17 93.6 197 35.5
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 2.7e-17 93.6 150 40.0
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 2.7e-17 93.6 97 48.5
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 2.3e-16 90.5 256 29.7
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 5.2e-16 89.4 189 33.9
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 8.8e-16 88.6 99 47.5
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 2.6e-15 87.0 144 36.1
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 5.7e-15 85.9 135 41.5
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 9.7e-15 85.1 135 38.5
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 3.7e-14 83.2 78 52.6
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.7e-14 83.2 130 38.5
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 7.0e-13 79.0 86 47.7
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 2.6e-07 60.5 95 37.9
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 6.3e-06 55.8 70 41.4


User provided reference genes

Program Settings