Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 3.7e-135 485.0 256 100.0
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 5.3e-110 401.4 256 83.2
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 4.1e-102 375.2 254 78.0
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.0e-100 368.2 254 77.2
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 8.3e-95 350.9 248 75.0
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.5e-91 339.3 253 73.1
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.6e-90 336.7 251 69.3
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 3.6e-90 335.5 254 69.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.3e-84 317.0 245 67.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 5.0e-84 315.1 240 70.0
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 9.5e-83 310.8 238 68.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 8.0e-82 307.8 238 68.1
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.1e-74 283.1 245 62.0
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 5.2e-73 278.5 243 58.8
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 9.8e-72 274.2 245 58.8
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 2.2e-71 273.1 238 60.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 8.3e-71 271.2 254 57.1
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.1e-70 268.9 245 58.8
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.2e-69 267.3 238 58.4
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.7e-69 266.2 238 59.7
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.7e-69 266.2 244 54.9
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.0e-68 264.2 246 57.3
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.3e-68 263.8 238 58.8
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.9e-67 260.0 238 55.5
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.9e-67 260.0 246 56.9
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.9e-67 260.0 221 62.0
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 3.3e-67 259.2 238 58.0
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.2e-66 257.3 244 53.7
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.1e-66 256.5 238 58.0
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.6e-66 255.8 243 58.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.2e-66 255.0 242 56.6
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 6.2e-66 255.0 242 56.6
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.4e-65 253.8 240 57.5
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.4e-65 253.8 236 57.2
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.3e-65 253.1 240 56.2
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 4.0e-65 252.3 238 57.1
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.2e-64 250.8 244 54.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.5e-64 250.4 238 53.8
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.3e-63 247.3 237 54.4
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.7e-63 246.9 245 55.1
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.9e-63 246.1 240 55.0
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 4.1e-62 242.3 246 56.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 3.5e-61 239.2 246 55.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.5e-61 239.2 241 52.3
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 6.0e-61 238.4 197 60.9
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.9e-59 233.4 234 52.6
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 5.6e-59 231.9 259 50.6
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.2e-58 230.7 257 51.4
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.2e-58 230.7 206 60.2
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 4.7e-58 228.8 234 53.8
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 6.2e-58 228.4 247 49.8
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 5.8e-56 221.9 196 57.1
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 7.6e-56 221.5 238 47.9
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 7.6e-56 221.5 200 57.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 7.6e-56 221.5 210 56.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.2e-55 219.9 240 47.1
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 6.4e-55 218.4 242 47.9
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.1e-54 217.6 243 46.5
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.9e-54 216.9 242 47.9
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.4e-54 216.5 245 49.4
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 3.2e-54 216.1 242 47.1
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 5.4e-54 215.3 205 56.6
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 7.1e-54 214.9 242 46.7
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.1e-54 214.9 242 47.1
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.6e-53 213.8 245 47.8
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.6e-53 213.8 241 49.0
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.1e-53 213.4 249 47.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.7e-53 213.0 240 48.8
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 2.7e-53 213.0 245 45.7
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.5e-53 212.6 242 47.5
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 4.6e-53 212.2 223 55.2
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 7.8e-53 211.5 196 56.6
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.0e-52 211.1 241 46.9
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.0e-52 211.1 241 46.9
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 2.5e-51 206.5 243 46.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 4.3e-51 205.7 208 53.4
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 7.3e-51 204.9 248 44.8
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.1e-49 199.5 230 47.0
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 4.0e-49 199.1 195 52.8
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.6e-48 196.4 242 50.0
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.6e-48 196.4 242 44.6
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-47 194.1 236 46.2
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.4e-46 190.7 237 45.6
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 2.4e-46 189.9 292 42.8
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 9.3e-46 188.0 238 47.9
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-45 187.6 237 44.7
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.7e-45 186.4 249 44.2
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.0e-45 185.3 246 43.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 8.7e-44 181.4 247 43.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.1e-43 181.0 207 50.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 5.6e-43 178.7 196 48.0
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.1e-42 176.8 182 52.2
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.1e-41 174.5 238 46.2
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.5e-40 169.1 197 45.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.3e-39 167.5 237 41.4
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.6e-37 160.6 168 52.4
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 3.5e-37 159.5 236 39.4
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.8e-36 157.1 278 38.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.3e-36 156.8 246 38.2
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 5.1e-36 155.6 236 40.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 6.7e-36 155.2 238 40.8
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-35 154.1 240 36.7
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 9.6e-35 151.4 237 38.4
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.8e-34 149.1 235 38.7
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 9.0e-33 144.8 181 44.2
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 5.8e-32 142.1 241 37.3
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 9.9e-32 141.4 207 40.6
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-31 140.2 239 36.0
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 6.4e-31 138.7 236 37.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.9e-30 137.1 227 40.1
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.6e-29 134.0 152 48.7
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.3e-28 131.0 120 53.3
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.3e-28 130.2 109 56.0
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 4.3e-27 125.9 106 58.5
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 6.2e-26 122.1 210 39.0
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.4e-25 120.2 105 57.1
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.9e-25 118.6 145 42.1
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.1e-21 107.1 155 38.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 2.1e-21 107.1 106 56.6
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.0e-20 104.8 106 50.9
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.3e-20 104.4 111 45.9
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.7e-18 96.3 133 42.9
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.4e-17 94.4 113 48.7
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.4e-17 94.4 113 48.7
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 4.5e-16 89.4 106 40.6
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 1.0e-15 88.2 106 40.6
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 1.4e-14 84.3 106 41.5
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.7e-13 80.1 95 48.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.8e-12 77.4 107 39.3
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-10 70.5 67 47.8
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.8e-10 69.3 71 43.7
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 7.7e-08 62.0 75 45.3
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-07 60.5 140 32.9
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 3.2e-06 56.6 91 38.5
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 5.5e-06 55.8 114 33.3
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 7.2e-06 55.5 118 33.1
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 9.4e-06 55.1 221 25.8


User provided reference genes

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