Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 2.2e-97 359.0 185 100.0
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 1.9e-72 276.2 153 92.8
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 2.7e-63 245.7 153 84.3
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.2e-58 230.3 153 80.4
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 5.7e-53 211.5 156 73.7
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 4.8e-52 208.4 156 73.1
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 6.5e-49 198.0 153 71.9
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 1.4e-48 196.8 156 71.2
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 2.5e-48 196.1 157 69.4
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 3.0e-46 189.1 156 67.3
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 3.0e-38 162.5 156 61.5
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 6.7e-38 161.4 153 64.1
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 1.1e-37 160.6 163 61.3
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 3.3e-37 159.1 153 63.4
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 5.7e-37 158.3 163 62.0
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 4.5e-34 148.7 141 61.0
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 7.7e-34 147.9 137 62.0
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 7.7e-34 147.9 179 54.7
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 2.2e-33 146.4 162 53.1
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 2.5e-32 142.9 171 52.0
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 4.2e-32 142.1 140 62.1
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 4.2e-32 142.1 158 56.3
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 4.2e-32 142.1 130 65.4
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 4.2e-32 142.1 149 61.1
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 5.5e-32 141.7 125 64.0
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 7.2e-32 141.4 166 54.8
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 7.2e-32 141.4 166 54.2
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 9.4e-32 141.0 176 54.5
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 2.7e-31 139.4 155 55.5
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 2.7e-31 139.4 109 71.6
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 3.6e-31 139.0 132 62.9
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 3.6e-31 139.0 127 62.2
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 6.1e-31 138.3 124 63.7
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 1.4e-30 137.1 171 50.3
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 1.8e-30 136.7 157 56.7
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.8e-30 136.7 179 52.0
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 2.3e-30 136.3 167 53.9
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 2.3e-30 136.3 165 53.9
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.0e-30 136.0 142 60.6
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 3.0e-30 136.0 142 60.6
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 3.0e-30 136.0 85 85.9
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 3.9e-30 135.6 171 52.0
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 6.7e-30 134.8 129 61.2
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 6.7e-30 134.8 151 55.6
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 6.7e-30 134.8 151 55.6
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 1.5e-29 133.7 131 60.3
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 2.0e-29 133.3 142 59.2
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 3.3e-29 132.5 149 52.3
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.3e-29 132.5 154 55.8
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 3.3e-29 132.5 183 48.6
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 4.4e-29 132.1 109 67.9
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 4.4e-29 132.1 99 70.7
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 5.7e-29 131.7 160 53.1
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 7.4e-29 131.3 117 66.7
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 7.4e-29 131.3 117 66.7
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.3e-28 130.6 165 51.5
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 1.3e-28 130.6 86 77.9
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 1.7e-28 130.2 112 64.3
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 1.7e-28 130.2 123 64.2
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 1.7e-28 130.2 172 50.6
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 1.7e-28 130.2 102 69.6
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 1.7e-28 130.2 104 68.3
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.7e-28 130.2 160 52.5
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.7e-28 130.2 86 79.1
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 2.2e-28 129.8 164 51.8
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 2.2e-28 129.8 115 64.3
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 2.2e-28 129.8 82 79.3
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 2.2e-28 129.8 127 59.8
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-28 129.8 154 55.2
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-28 129.8 154 55.2
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 2.2e-28 129.8 82 81.7
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 2.2e-28 129.8 167 50.9
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 2.8e-28 129.4 96 70.8
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.8e-28 129.4 98 68.4
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 3.7e-28 129.0 182 47.8
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 3.7e-28 129.0 101 70.3
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 4.8e-28 128.6 133 58.6
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 4.8e-28 128.6 159 52.8
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 4.8e-28 128.6 159 52.8
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 4.8e-28 128.6 165 49.7
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 4.8e-28 128.6 165 50.3
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 6.3e-28 128.3 162 54.3
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 6.3e-28 128.3 115 66.1
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 6.3e-28 128.3 168 51.8
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 8.2e-28 127.9 124 61.3
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 8.2e-28 127.9 113 61.1
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 1.8e-27 126.7 124 56.5
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 1.8e-27 126.7 122 63.1
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 1.8e-27 126.7 122 58.2
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.4e-27 126.3 143 52.4
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 3.1e-27 125.9 95 70.5
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 3.1e-27 125.9 95 70.5
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 3.1e-27 125.9 85 75.3
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 5.3e-27 125.2 95 70.5
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 1.6e-26 123.6 100 69.0
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 2.0e-26 123.2 81 77.8
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 2.0e-26 123.2 136 56.6
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 2.0e-26 123.2 136 56.6
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 2.6e-26 122.9 98 70.4
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 7.7e-26 121.3 152 52.0
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 1.7e-25 120.2 113 65.5
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 6.5e-25 118.2 108 62.0
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 1.1e-24 117.5 162 47.5
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 7.2e-24 114.8 137 55.5
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 9.4e-24 114.4 150 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 2.7e-23 112.8 95 61.1
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 4.0e-22 109.0 64 85.9
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.5e-21 107.1 138 47.8
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 3.3e-21 105.9 82 67.1
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 3.3e-21 105.9 82 68.3
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 4.4e-21 105.5 95 60.0
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 4.5e-18 95.5 82 61.0
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.0e-14 84.3 86 54.7
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.5e-13 80.5 85 52.9
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 4.4e-13 79.0 81 51.9
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 5.7e-13 78.6 92 48.9
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 5.5e-08 62.0 60 56.7


User provided reference genes

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