Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2280.4 1176 100.0
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2216.8 1178 95.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 2119.0 1200 90.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 2106.6 1202 90.3
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 2039.6 1176 88.2
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2030.8 1212 86.5
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2028.1 1212 86.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 2011.5 1174 88.1
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 2005.7 1173 87.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1999.2 1171 87.8
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1973.7 1234 83.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1940.6 1175 84.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1895.6 1173 82.9
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1882.1 1171 82.2
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1880.9 1205 80.7
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1878.6 1171 82.0
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1864.4 1173 81.5
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1860.1 1172 80.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1860.1 1172 80.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1851.6 1173 81.2
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1851.6 1182 80.5
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1850.5 1171 80.8
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1848.9 1173 81.2
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1846.2 1076 88.5
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1845.1 1173 80.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1843.6 1181 80.4
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1842.8 1173 80.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1839.7 1173 81.2
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1838.2 1171 79.6
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1837.4 1171 80.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1833.9 1171 79.9
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1832.4 1173 80.6
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1827.0 1219 78.0
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1826.2 1215 78.1
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1826.2 1171 79.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1824.3 1219 77.9
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1820.4 1173 80.2
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1819.3 1219 77.9
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1819.3 1173 80.1
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1818.1 1169 79.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1816.6 1173 80.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1171 78.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1805.4 1177 78.8
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1171 78.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1798.1 1228 75.9
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1797.7 1172 78.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1792.3 1169 79.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1230 75.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1775.4 1172 77.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1775.0 1172 77.0
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1770.4 1174 78.1
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1768.1 1173 78.1
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1759.2 1174 77.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1751.5 1173 76.8
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1743.0 1171 76.3
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1173 77.5
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1173 77.6
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1170 75.8
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1735.7 1173 77.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1728.0 1172 75.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1726.8 1170 75.9
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1726.8 1214 75.0
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1726.1 1173 76.0
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1722.2 1177 75.4
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1721.8 1210 74.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1709.5 1171 75.0
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1171 74.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1702.2 1168 74.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1158 75.3
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1701.4 1174 75.0
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1697.6 1172 74.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1697.6 1171 74.8
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1695.2 1176 74.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1168 74.4
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1176 74.2
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1180 74.7
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1688.7 1175 75.0
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1687.9 1202 73.5
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1687.9 1177 74.1
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1687.5 1182 74.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1687.5 1233 71.9
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1178 74.9
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1173 74.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1171 74.0
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1683.3 1175 74.0
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1680.6 1176 73.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1678.3 1171 74.6
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1676.4 1176 74.4
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1180 73.3
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1204 73.3
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1674.4 1231 71.6
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1674.1 1181 74.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1672.1 1098 77.4
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1671.4 1177 73.3
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1173 74.2
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1659.8 1210 72.1
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1173 74.0
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1175 73.0
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1651.7 1168 73.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1175 74.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1648.6 1173 74.0
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1172 73.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1635.5 1182 72.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1632.1 1175 73.5
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1628.6 1146 73.3
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1616.3 1174 72.8
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1612.8 1178 71.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1587.8 1202 70.5
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1582.8 1204 69.7
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1576.6 1185 71.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1576.2 1168 72.2
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1569.3 1148 70.6
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1533.5 1178 68.0
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1531.9 1175 68.3
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1528.5 1181 68.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1525.4 1177 67.6
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1525.4 1185 67.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1521.5 1109 72.6
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1472.6 947 79.1
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1453.0 1174 66.9
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1452.6 970 77.2
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1448.7 947 78.7
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1417.5 1180 65.0
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1396.7 1034 72.6
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1325.1 945 73.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1288.1 888 74.7
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1272.7 958 70.9
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1266.1 977 69.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1258.8 807 81.2
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1255.0 967 69.9
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1208.7 1173 58.3
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1200.3 814 76.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1169.1 812 75.2
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1162.9 806 75.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 8.8e-309 1063.9 723 76.8
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.0e-305 1052.7 1168 54.4
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.8e-277 959.9 1178 46.9
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 6.4e-275 951.4 1209 45.1
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.4e-266 921.8 540 85.4
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 9.2e-266 921.0 603 78.8
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.3e-255 885.6 716 66.3
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.3e-181 639.4 432 74.1
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.7e-167 592.8 360 82.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.5e-148 530.4 616 52.3
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 3.9e-131 473.8 897 38.9
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.8e-127 459.9 307 74.3
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 7.8e-124 449.5 804 37.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 8.7e-123 446.0 305 73.1
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.9e-122 444.9 305 73.1
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.4e-120 438.7 285 79.6
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.8e-105 387.1 1325 28.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 5.5e-93 347.1 227 74.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.7e-86 325.5 510 42.0
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 6.7e-83 313.5 205 77.1
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 2.8e-81 308.1 199 76.4
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 3.7e-81 307.8 281 63.0
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.1e-76 290.4 182 79.1
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.8e-73 280.8 187 72.7
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.5e-69 268.5 186 76.9
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 4.2e-69 267.7 259 61.0
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 7.5e-66 256.9 144 87.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.6e-60 239.2 173 73.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.1e-53 216.5 181 63.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.1e-44 185.7 132 75.8
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.4e-40 172.2 125 73.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 4.6e-39 167.9 118 74.6
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.4e-32 146.4 86 84.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 4.1e-32 144.8 91 79.1
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 4.1e-32 144.8 91 79.1
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 5.2e-27 127.9 92 71.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.8e-23 114.0 67 85.1
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.2e-20 106.7 59 86.4
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.8e-19 100.9 96 52.1
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.5e-18 99.8 83 67.5
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 9.3e-16 90.5 81 58.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 7.8e-15 87.4 46 76.1
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 3.0e-14 85.5 107 49.5
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 3.8e-09 68.6 64 57.8
Lsat_1_v5_gn_6_60101 Lactuca sativa HOM05D003952 ORTHO05D230796 8.7e-06 57.4 32 71.9


User provided reference genes

Program Settings