Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 5.1e-88 327.8 174 100.0
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 9.0e-85 317.0 174 96.6
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.7e-73 278.9 174 82.8
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.2e-70 269.2 174 82.2
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.4e-68 261.9 186 79.6
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.9e-67 258.8 183 78.7
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.6e-65 251.5 185 76.2
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 6.9e-61 237.7 178 75.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.0e-60 236.1 175 77.7
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 5.9e-60 234.6 178 75.3
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 8.5e-59 230.7 189 72.5
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 9.4e-58 227.3 193 71.5
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.6e-57 226.5 193 71.5
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.1e-57 226.1 178 73.6
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 7.9e-57 224.2 187 70.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 3.0e-56 222.2 177 73.4
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 6.7e-56 221.1 197 68.0
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.3e-55 218.8 180 72.8
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 8.2e-54 214.2 181 70.7
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 2.6e-52 209.1 174 69.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.6e-52 209.1 193 66.8
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.4e-52 208.8 188 63.3
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 7.7e-52 207.6 193 65.3
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.9e-51 205.7 198 64.1
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 5.5e-50 201.4 182 67.6
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.2e-49 200.3 180 66.7
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.1e-49 199.5 189 65.1
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.7e-49 199.1 186 64.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 3.6e-49 198.7 190 62.6
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 4.7e-49 198.4 181 65.2
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.8e-48 196.4 176 66.5
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.3e-48 196.1 190 66.3
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.2e-48 194.9 190 62.6
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 6.7e-48 194.5 189 61.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.5e-47 193.4 186 63.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 2.0e-47 193.0 187 63.6
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.0e-47 193.0 193 62.2
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.6e-47 192.6 172 66.9
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.6e-47 192.6 188 61.2
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.6e-47 192.6 190 62.6
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.6e-47 192.6 176 65.3
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 3.3e-47 192.2 189 60.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.4e-47 191.8 185 64.9
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 4.4e-47 191.8 180 62.8
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.7e-47 191.4 190 63.2
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 5.7e-47 191.4 190 62.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 7.4e-47 191.0 191 61.3
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 8.2e-46 187.6 176 64.8
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 8.2e-46 187.6 188 63.8
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.1e-45 187.2 193 60.1
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.4e-45 186.8 183 66.1
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.4e-45 186.8 178 66.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-45 186.8 183 63.9
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.4e-45 186.8 189 61.4
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-45 186.4 176 66.5
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.4e-45 186.0 174 61.5
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 3.1e-45 185.7 184 60.9
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.1e-45 185.7 193 59.6
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.1e-45 185.3 188 62.8
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.1e-45 185.3 176 63.6
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.2e-44 183.7 176 62.5
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.0e-44 183.0 178 61.2
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 4.5e-44 181.8 181 61.9
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 4.5e-44 181.8 185 60.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 5.9e-44 181.4 189 59.8
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 7.7e-44 181.0 176 65.3
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.3e-43 180.3 190 60.5
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.7e-43 179.9 186 61.3
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.9e-43 179.1 178 64.0
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.9e-43 179.1 182 62.6
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 5.0e-43 178.3 170 62.9
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 6.5e-43 177.9 176 64.2
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 6.5e-43 177.9 174 62.1
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.5e-43 177.9 196 60.2
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 8.5e-43 177.6 176 64.2
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 8.5e-43 177.6 183 62.3
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 8.5e-43 177.6 184 62.0
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.1e-42 177.2 174 60.3
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.5e-42 176.8 136 69.9
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.9e-42 176.4 175 64.0
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.9e-42 176.4 177 62.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.5e-42 176.0 177 64.4
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.5e-42 176.0 177 64.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.5e-42 174.9 176 63.6
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 7.2e-42 174.5 176 61.9
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.4e-42 174.1 177 62.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.2e-41 173.7 176 62.5
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.2e-41 173.7 134 72.4
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.6e-41 173.3 178 64.0
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.6e-41 173.3 178 62.9
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 2.1e-41 172.9 179 59.2
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.7e-41 172.6 176 61.4
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.7e-41 172.6 182 58.8
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.7e-41 172.6 198 54.0
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 3.6e-41 172.2 178 63.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.7e-41 171.8 191 59.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 6.1e-41 171.4 178 62.9
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 8.0e-41 171.0 174 58.6
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.4e-40 170.2 185 58.4
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.8e-40 169.9 190 59.5
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.3e-40 169.5 184 57.6
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.0e-40 169.1 181 58.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 3.0e-40 169.1 194 56.7
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 5.2e-40 168.3 175 61.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 6.7e-40 167.9 179 60.3
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 6.7e-40 167.9 150 67.3
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.5e-39 166.8 177 62.1
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.5e-39 166.8 179 57.5
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 2.0e-39 166.4 177 61.6
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.7e-38 163.3 88 89.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 6.3e-38 161.4 183 56.8
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.4e-37 160.2 186 54.3
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.8e-37 159.8 188 56.4
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.8e-37 159.8 161 60.2
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.8e-37 159.8 200 52.5
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.1e-37 159.1 180 58.9
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 3.1e-37 159.1 184 55.4
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.6e-36 156.8 170 56.5
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 7.7e-36 154.5 171 57.3
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.9e-34 149.8 213 51.6
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 3.2e-34 149.1 204 49.5
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.1e-33 146.4 108 71.3
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.3e-32 142.9 163 57.1
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 8.8e-32 141.0 196 48.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 5.4e-29 131.7 75 84.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 9.1e-29 131.0 70 87.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 3.5e-28 129.0 69 82.6
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 4.2e-26 122.1 97 69.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 4.7e-25 118.6 146 56.2
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.0e-23 113.2 150 46.7
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 9.8e-23 110.9 82 63.4
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.2e-22 109.8 143 56.6
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 3.7e-22 109.0 68 79.4
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.1e-21 107.5 73 76.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.0e-20 103.2 175 42.9
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.5e-18 97.1 169 44.4
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 7.3e-18 94.7 82 54.9
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.2e-17 94.0 176 40.3
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.1e-17 93.2 80 52.5
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 4.7e-17 92.0 147 46.9
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.4e-16 90.5 166 45.2
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.9e-14 82.0 86 59.3
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 5.6e-10 68.6 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.5e-07 60.5 39 64.1


User provided reference genes

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