Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 0.0e+00 1185.2 613 100.0
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 0.0e+00 1123.6 613 95.1
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 3.0e-308 1061.2 613 89.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.0e-284 981.5 616 83.1
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.4e-281 971.8 618 82.2
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 6.7e-268 927.2 633 77.4
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 6.7e-268 927.2 633 77.4
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 4.5e-264 914.4 623 77.5
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 4.5e-264 914.4 616 78.6
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 3.0e-260 901.7 638 75.4
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 4.5e-256 887.9 610 76.1
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.4e-252 876.3 613 74.6
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 3.1e-249 865.1 620 72.9
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 3.8e-247 858.2 617 71.8
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 5.0e-247 857.8 612 72.4
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 4.2e-246 854.7 613 73.2
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 4.2e-246 854.7 610 73.1
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 7.2e-246 854.0 632 72.5
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 9.4e-246 853.6 613 73.1
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.2e-245 853.2 629 71.4
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 1.6e-245 852.8 612 71.9
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 8.8e-244 847.0 618 71.8
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 2.6e-243 845.5 612 72.2
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 5.7e-243 844.3 612 70.6
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 2.8e-242 842.0 617 72.3
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.4e-241 839.7 612 71.7
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.4e-241 839.0 612 70.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 7.0e-241 837.4 613 71.8
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 5.9e-240 834.3 615 70.7
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 3.8e-239 831.6 618 71.2
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 5.0e-239 831.2 621 70.0
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 8.5e-239 830.5 653 68.3
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.9e-238 829.3 613 71.6
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 5.5e-238 827.8 622 69.6
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 7.2e-238 827.4 613 72.8
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 9.4e-238 827.0 615 70.1
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.7e-237 825.5 612 71.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.7e-237 824.7 638 69.0
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 8.0e-237 823.9 616 70.8
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.0e-236 823.5 615 70.4
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.2e-236 821.2 613 72.4
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.2e-236 821.2 618 71.2
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.8e-236 820.8 613 72.3
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 8.8e-236 820.5 615 70.6
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 8.8e-236 820.5 617 70.7
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.6e-235 818.9 615 69.8
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 3.4e-235 818.5 628 70.2
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 4.4e-235 818.1 632 68.0
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 4.1e-233 811.6 617 69.5
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 9.1e-233 810.4 574 73.5
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 5.9e-232 807.7 628 68.6
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.7e-231 806.2 636 68.4
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.6e-229 799.7 646 65.8
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.7e-229 798.9 636 68.1
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.4e-228 796.6 621 68.1
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.4e-228 796.6 620 69.2
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.4e-227 791.6 616 68.7
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.7e-226 789.6 616 68.7
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.2e-226 789.3 639 66.5
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.6e-224 783.1 633 67.1
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 2.0e-224 782.7 635 66.5
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.0e-224 782.7 756 57.4
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.0e-223 780.4 645 66.2
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 3.8e-223 778.5 507 77.1
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.1e-221 772.7 636 67.3
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 3.6e-221 771.9 638 67.6
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 4.7e-221 771.5 633 66.4
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 4.0e-220 768.5 617 68.6
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.6e-219 765.8 641 65.1
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.6e-219 765.8 654 64.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 9.8e-219 763.8 618 65.0
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.3e-218 763.5 621 65.1
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 1.1e-217 760.4 632 64.4
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.1e-217 760.4 616 66.9
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 2.4e-217 759.2 648 63.7
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 3.2e-217 758.8 633 65.9
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 9.2e-217 757.3 630 64.1
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.6e-216 756.5 633 65.7
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 2.0e-216 756.1 645 64.0
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 2.7e-216 755.7 622 66.4
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.5e-216 755.4 621 64.7
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 5.9e-216 754.6 627 64.0
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 7.8e-216 754.2 621 64.7
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 2.3e-215 752.7 621 64.4
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.3e-215 752.7 614 65.8
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 2.9e-215 752.3 630 64.1
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 8.6e-215 750.7 631 63.9
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.1e-214 750.4 621 67.0
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.1e-214 750.4 642 64.3
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.5e-214 750.0 620 66.8
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 4.7e-213 745.0 619 64.5
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 4.7e-213 745.0 619 64.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.2e-213 744.6 615 66.0
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 5.2e-212 741.5 623 64.0
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 8.9e-212 740.7 620 65.5
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 1.5e-211 740.0 614 64.8
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 2.2e-210 736.1 651 62.4
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 2.7e-208 729.2 614 62.7
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 4.6e-208 728.4 641 61.6
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 4.3e-206 721.8 614 63.0
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.1e-201 707.2 617 62.1
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.3e-199 700.3 489 73.4
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 8.6e-199 697.6 587 64.9
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 5.8e-195 684.9 639 60.6
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 9.2e-193 677.6 616 61.0
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.1e-190 670.6 457 74.0
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.1e-190 670.6 397 83.1
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 9.6e-190 667.5 645 56.1
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 4.7e-189 665.2 611 60.2
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.2e-184 650.6 676 56.2
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.6e-184 648.7 615 57.6
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 4.3e-182 642.1 431 75.4
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.7e-175 620.2 484 65.9
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 4.3e-174 615.5 633 57.2
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.9e-170 602.8 627 55.5
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 2.7e-168 596.3 452 66.4
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.1e-166 590.9 547 59.2
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 4.8e-165 585.5 610 51.6
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.4e-164 583.9 461 65.1
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.7e-162 577.0 315 88.6
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 2.3e-159 566.6 364 76.6
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.1e-157 560.1 658 48.8
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 6.3e-157 558.5 612 52.9
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.0e-154 551.2 300 87.7
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.9e-153 547.0 651 49.5
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.3e-151 540.0 656 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.0e-147 526.9 681 46.8
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.2e-144 517.7 313 79.9
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.6e-128 464.2 316 72.2
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 3.3e-126 456.4 560 47.1
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 7.0e-124 448.7 301 73.4
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 2.1e-112 410.6 302 72.5
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.9e-101 372.9 260 70.0
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.9e-101 372.9 260 70.0
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 5.1e-82 309.7 242 73.6
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.0e-66 258.8 228 64.0
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.8e-58 231.5 343 40.8
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 2.0e-38 164.9 168 58.3
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 2.5e-36 157.9 178 52.2
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.5e-30 138.7 87 74.7
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 8.5e-29 132.9 197 47.7
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.4e-28 132.1 316 32.6
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.7e-27 127.9 355 31.8
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.5e-25 122.1 160 55.6
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.8e-24 117.9 132 53.8
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.4e-20 105.5 141 51.8
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.9e-20 105.1 92 63.0
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 4.1e-15 87.4 108 53.7
Ca_11944_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.3e-15 87.0 91 57.1
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 2.2e-13 81.6 65 67.7
Ca_27140_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.0e-13 80.5 72 65.3
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 5.5e-12 77.0 133 43.6
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 6.1e-11 73.6 149 41.6
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 6.7e-10 70.1 149 38.3
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 5.7e-09 67.0 164 35.4


User provided reference genes

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