Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.7e-89 332.8 189 100.0
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.7e-81 306.2 189 93.1
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.9e-67 259.6 191 80.1
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.1e-62 243.8 187 73.3
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.6e-61 239.2 189 77.8
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.6e-61 239.2 190 77.9
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.9e-59 233.0 191 75.9
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.6e-58 229.9 206 69.9
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 3.5e-58 228.8 206 69.4
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 7.8e-58 227.6 189 73.5
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 3.9e-57 225.3 206 68.0
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.5e-56 223.4 191 76.4
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.1e-54 217.2 208 69.7
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 4.4e-53 211.8 207 63.8
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 2.5e-48 196.1 206 64.6
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 4.7e-47 191.8 156 78.2
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-45 187.2 190 62.1
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 3.6e-39 165.6 203 54.7
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.1e-38 164.1 203 54.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.1e-38 162.5 200 50.0
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 5.3e-38 161.8 207 57.5
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 5.3e-38 161.8 207 57.5
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 9.0e-38 161.0 208 53.4
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.5e-37 160.2 206 53.9
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 5.8e-37 158.3 208 56.2
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.9e-37 157.5 199 55.8
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.3e-36 157.1 206 53.9
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 2.2e-36 156.4 207 53.6
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 3.8e-36 155.6 202 52.0
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 4.9e-36 155.2 201 54.2
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 6.4e-36 154.8 188 51.6
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.4e-36 154.5 199 54.8
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.9e-35 153.3 203 51.7
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.4e-35 152.9 206 58.3
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.6e-34 150.2 205 57.6
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.6e-34 150.2 194 51.5
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 7.8e-34 147.9 196 51.5
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 3.0e-33 146.0 195 53.3
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.1e-33 145.2 208 50.5
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 6.6e-33 144.8 205 51.7
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 8.7e-33 144.4 147 70.7
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-32 144.1 197 52.3
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.1e-32 144.1 197 52.3
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.5e-32 142.9 194 52.1
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.5e-32 142.9 207 52.2
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.6e-32 141.7 195 54.4
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.6e-32 141.7 197 53.3
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 7.3e-32 141.4 203 50.2
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 9.6e-32 141.0 206 53.9
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.6e-32 141.0 189 56.6
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 1.3e-31 140.6 207 55.6
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.3e-31 140.6 189 56.6
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.6e-31 140.2 206 53.9
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 2.8e-31 139.4 195 46.7
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.6e-31 139.0 181 55.8
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 8.1e-31 137.9 196 50.0
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.4e-30 137.1 204 49.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.4e-30 137.1 204 49.0
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.4e-30 137.1 207 52.7
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.4e-30 137.1 178 55.1
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 3.1e-30 136.0 144 65.3
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.0e-30 135.6 189 55.0
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.0e-30 135.6 207 54.1
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.3e-30 135.2 203 48.3
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 5.3e-30 135.2 208 48.6
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 6.9e-30 134.8 204 48.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.0e-30 134.4 191 51.8
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 9.0e-30 134.4 206 52.9
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.0e-29 133.3 201 43.3
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-29 133.3 191 51.8
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.0e-29 133.3 196 43.4
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.6e-29 132.9 204 45.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.6e-29 132.9 204 45.6
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 2.6e-29 132.9 204 48.0
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.5e-29 132.1 191 51.3
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 5.8e-29 131.7 201 42.8
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 5.8e-29 131.7 207 53.6
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 5.8e-29 131.7 188 52.1
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 7.6e-29 131.3 207 51.7
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.6e-29 131.3 207 51.7
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.7e-28 130.2 207 51.2
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.7e-28 130.2 204 47.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 2.2e-28 129.8 205 48.3
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.2e-28 129.8 207 51.7
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.2e-28 129.8 204 48.0
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.9e-28 129.4 188 52.1
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.9e-28 128.6 207 53.1
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 8.4e-28 127.9 199 49.2
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 8.4e-28 127.9 198 47.5
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 8.4e-28 127.9 200 51.5
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 1.1e-27 127.5 193 49.2
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.4e-27 127.1 207 50.7
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.9e-27 126.7 188 47.9
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.2e-27 125.6 198 48.5
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 4.2e-27 125.6 195 47.7
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 9.3e-27 124.4 195 40.5
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 9.3e-27 124.4 195 51.3
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.6e-26 123.6 184 46.2
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.6e-26 123.6 206 48.1
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 2.7e-26 122.9 195 46.7
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.5e-26 122.5 207 50.2
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 3.5e-26 122.5 190 46.8
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 6.0e-26 121.7 177 42.9
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.9e-26 121.3 204 49.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.0e-25 120.9 206 46.6
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.3e-25 120.6 189 44.4
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.8e-25 120.2 194 46.4
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.3e-25 119.8 181 53.0
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.3e-25 119.8 198 47.5
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 3.0e-25 119.4 139 51.1
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 1.1e-24 117.5 174 44.8
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.5e-24 116.3 180 50.0
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.5e-24 116.3 189 45.0
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 5.6e-24 115.2 192 46.9
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 7.4e-24 114.8 189 43.9
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 7.4e-24 114.8 180 46.7
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.6e-23 113.6 189 44.4
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.1e-23 113.2 190 44.7
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 2.1e-23 113.2 189 42.3
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.8e-23 112.8 181 41.4
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.8e-23 112.8 185 48.6
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.8e-23 112.8 184 49.5
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.8e-23 112.8 248 33.9
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 6.2e-23 111.7 181 44.8
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 6.2e-23 111.7 194 47.9
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 8.1e-23 111.3 185 45.9
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.1e-22 110.9 183 42.1
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.4e-22 110.5 200 51.5
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 5.3e-22 108.6 199 40.7
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 6.9e-22 108.2 195 42.6
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 6.9e-22 108.2 190 41.6
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.9e-22 108.2 181 45.9
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-21 107.5 169 46.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.2e-21 107.5 190 43.2
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.2e-21 107.5 194 42.8
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.5e-21 107.1 196 45.4
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.5e-21 107.1 174 43.1
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.5e-21 105.5 199 40.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 4.5e-21 105.5 174 41.4
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 5.8e-21 105.1 195 52.3
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 7.6e-21 104.8 185 44.3
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 9.9e-21 104.4 173 44.5
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 3.8e-20 102.4 198 40.4
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.8e-20 102.4 180 41.1
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 8.4e-20 101.3 181 37.0
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.2e-19 99.4 193 41.5
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.2e-19 99.4 110 65.5
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.2e-19 99.4 176 42.0
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 4.2e-19 99.0 125 49.6
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.5e-19 98.6 170 44.1
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.2e-18 97.4 195 43.1
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.6e-18 97.1 130 50.0
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.6e-18 97.1 169 46.2
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 2.1e-18 96.7 204 43.6
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 2.7e-18 96.3 198 47.5
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.0e-18 95.1 176 41.5
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.9e-18 94.7 167 43.7
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.9e-18 94.7 169 41.4
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 2.3e-17 93.2 197 46.2
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 3.0e-17 92.8 197 46.2
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 8.7e-17 91.3 180 41.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-16 90.9 207 44.9
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.9e-16 90.1 180 50.0
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 5.6e-16 88.6 197 45.7
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.4e-16 88.2 101 52.5
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 9.6e-16 87.8 180 38.3
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.8e-15 86.3 198 44.9
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 6.2e-15 85.1 196 45.4
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 6.9e-14 81.6 98 63.3
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.2e-13 80.9 204 48.5
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.5e-13 80.5 201 43.3
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 2.6e-13 79.7 101 54.5
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 2.6e-13 79.7 101 54.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 1.7e-12 77.0 100 64.0
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 6.5e-12 75.1 92 52.2
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 6.7e-09 65.1 120 57.5
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 8.7e-09 64.7 96 64.6
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 7.4e-08 61.6 185 45.9
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 7.4e-08 61.6 171 44.4
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 2.2e-07 60.1 126 32.5
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 2.8e-07 59.7 77 53.2
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 4.1e-06 55.8 77 75.3


User provided reference genes

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