Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 0.0e+00 1317.4 664 100.0
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 0.0e+00 1161.0 671 89.9
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.4e-303 1045.0 687 81.1
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 7.0e-295 1016.9 691 78.6
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.4e-255 886.3 689 71.0
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-254 882.9 689 71.0
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 4.3e-252 874.8 708 68.2
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.0e-241 839.3 708 65.7
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 4.6e-230 801.6 698 64.0
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.3e-229 800.0 710 63.8
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 2.4e-226 789.3 688 63.7
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 1.7e-221 773.1 692 64.2
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.1e-220 770.4 698 61.6
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 9.0e-210 734.2 692 60.7
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 9.3e-207 724.2 758 56.3
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 4.6e-198 695.3 608 63.5
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 7.4e-196 688.0 684 58.6
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-195 686.8 684 58.9
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 2.2e-195 686.4 700 56.6
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 4.1e-186 655.6 705 55.2
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.9e-183 646.7 722 53.9
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 1.4e-181 640.6 719 52.9
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.3e-179 634.0 683 54.3
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.3e-176 624.0 721 52.0
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.7e-176 623.6 708 52.5
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 9.4e-175 617.8 703 54.2
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 6.1e-174 615.1 694 54.2
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.8e-173 613.6 700 53.1
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.7e-171 607.1 695 53.1
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.2e-171 606.7 690 53.9
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 6.3e-171 605.1 693 53.4
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.1e-170 604.4 705 53.0
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.1e-170 601.3 703 52.9
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.7e-169 599.7 711 51.5
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 2.2e-168 596.7 711 51.6
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 1.5e-167 594.0 715 52.0
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.1e-166 588.6 695 51.8
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 6.8e-165 585.1 720 51.4
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.8e-165 585.1 698 52.9
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 6.8e-165 585.1 708 51.7
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 1.2e-164 584.3 711 51.5
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 5.7e-164 582.0 641 53.5
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.7e-163 580.5 710 51.0
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.4e-162 576.6 686 52.5
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.1e-162 576.2 687 52.3
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 3.1e-162 576.2 738 49.9
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 5.9e-161 572.0 700 51.3
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-160 570.1 686 51.6
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 2.2e-160 570.1 713 50.4
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 3.8e-160 569.3 707 51.3
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 9.4e-159 564.7 746 49.1
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 8.8e-157 558.1 708 50.4
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 9.8e-156 554.7 672 51.8
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.9e-155 552.4 670 51.3
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.9e-155 552.4 668 50.3
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 3.8e-152 542.7 718 48.2
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 3.3e-151 539.7 695 50.8
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.3e-151 539.7 718 48.9
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 9.5e-151 538.1 702 49.1
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.8e-150 536.6 691 48.5
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 8.0e-150 535.0 713 48.9
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 1.4e-149 534.3 767 46.8
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.8e-149 533.9 820 44.5
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.3e-149 533.5 615 53.8
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.3e-149 533.5 699 50.1
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 1.2e-148 531.2 721 48.5
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.5e-148 530.8 628 51.3
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.6e-148 530.0 701 49.9
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.4e-148 529.3 630 51.9
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.3e-147 527.7 699 49.5
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.3e-147 525.0 707 48.8
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.2e-142 511.1 712 46.9
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.6e-142 510.8 701 47.8
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 6.2e-142 508.8 718 46.8
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 6.2e-142 508.8 686 46.6
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 4.4e-140 502.7 707 46.5
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.2e-139 500.4 547 54.8
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.9e-136 489.6 785 43.2
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.2e-134 484.6 680 47.2
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 8.1e-134 481.9 781 42.1
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 4.9e-131 472.6 688 44.5
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 6.0e-129 465.7 713 45.3
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.9e-128 463.0 696 44.5
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.9e-128 463.0 708 45.3
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 3.9e-128 463.0 690 45.1
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.5e-127 460.3 702 44.7
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 2.5e-127 460.3 726 42.4
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.2e-126 458.0 714 44.3
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.6e-126 457.6 736 43.3
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 1.6e-126 457.6 714 44.7
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.1e-126 457.2 707 45.0
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 8.1e-126 455.3 703 44.2
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 6.8e-125 452.2 698 41.5
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.4e-124 449.9 721 42.6
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 2.4e-122 443.7 731 45.3
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 7.1e-122 442.2 515 52.0
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 2.7e-121 440.3 688 44.0
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 2.3e-120 437.2 682 44.9
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 2.3e-120 437.2 479 54.3
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 8.6e-120 435.3 694 42.7
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.2e-118 429.1 705 44.0
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 2.4e-117 427.2 775 41.2
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.4e-117 427.2 679 43.0
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.2e-115 420.6 659 42.5
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 4.3e-111 406.4 699 40.6
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-109 401.4 651 42.5
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 2.2e-107 394.0 658 41.3
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 2.9e-107 393.7 648 42.4
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.9e-107 393.7 634 42.6
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 3.2e-106 390.2 658 41.8
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 5.4e-106 389.4 710 39.0
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 9.3e-106 388.7 650 41.7
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 7.9e-105 385.6 665 41.2
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 5.1e-104 382.9 719 37.8
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 8.7e-104 382.1 657 39.4
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 8.7e-104 382.1 651 39.9
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 1.9e-103 380.9 654 39.3
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 4.3e-103 379.8 654 40.4
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 7.4e-103 379.0 651 40.7
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 4.8e-102 376.3 653 39.2
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 4.8e-102 376.3 770 36.0
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 6.2e-102 375.9 658 40.4
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 4.0e-101 373.2 651 39.6
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 5.3e-101 372.9 661 40.8
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 5.3e-101 372.9 700 39.6
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 4.5e-100 369.8 649 40.1
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 9.9e-100 368.6 707 37.5
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.1e-98 365.2 690 40.9
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 1.2e-97 361.7 653 39.7
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.1e-97 360.9 569 44.8
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 3.5e-97 360.1 644 38.5
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.5e-97 360.1 691 39.9
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 3.7e-94 350.1 645 39.2
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.8e-94 349.7 301 61.5
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.4e-93 348.2 693 36.9
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 3.8e-91 340.1 540 41.7
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 4.9e-91 339.7 656 37.7
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 2.1e-86 324.3 856 33.5
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.1e-85 320.5 686 35.9
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.5e-84 318.2 348 54.9
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.6e-81 307.0 704 36.4
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.8e-75 287.0 301 54.2
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 5.0e-75 286.6 618 39.0
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.0e-75 286.6 368 46.5
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.1e-74 285.4 345 49.0
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 1.2e-73 282.0 279 57.3
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 7.9e-73 279.3 578 36.9
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.8e-72 278.1 441 45.1
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 2.2e-70 271.2 571 36.6
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 7.2e-66 256.1 284 52.8
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.6e-65 255.0 551 35.9
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 5.3e-61 240.0 638 33.4
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.6e-57 228.4 266 48.5
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.3e-55 220.7 286 46.5
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.8e-53 214.9 433 37.4
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.1e-45 189.1 144 71.5
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 6.5e-43 179.9 139 66.2
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.7e-38 164.1 187 55.1
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 3.8e-35 154.1 322 35.7
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 6.6e-35 153.3 165 59.4
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 6.1e-33 146.7 379 33.2
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 5.7e-31 140.2 435 31.5
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.7e-30 138.7 725 28.4
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.7e-30 138.7 241 38.2
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.2e-29 134.4 207 42.0
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 3.9e-27 127.5 316 32.6
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.1e-24 117.9 305 34.4
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 7.8e-20 103.2 447 30.0
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.2e-14 85.1 69 65.2
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.0e-11 74.7 60 58.3
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 3.3e-10 71.2 200 32.5
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 1.2e-09 69.3 202 29.7
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.2e-09 69.3 42 78.6
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 4.7e-09 67.4 205 33.2
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 4.7e-09 67.4 345 29.0
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.1e-08 64.7 113 40.7
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.4e-07 61.2 60 48.3
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 4.4e-07 60.8 56 66.1
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.8e-07 60.5 57 52.6


User provided reference genes

Program Settings