Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.5e-120 436.4 255 100.0
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 2.5e-115 419.1 256 89.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.8e-110 402.9 256 86.7
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.4e-107 393.3 256 85.5
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 7.2e-91 337.8 254 80.3
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 5.2e-89 331.6 255 72.9
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 5.7e-88 328.2 249 79.9
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 3.7e-87 325.5 255 72.2
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-86 323.9 255 71.0
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.0e-84 317.4 256 75.0
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.6e-82 310.1 250 70.8
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 2.7e-82 309.3 257 67.7
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.6e-80 302.8 257 68.1
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 1.3e-79 300.4 255 67.1
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 8.3e-79 297.7 257 65.8
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 8.3e-79 297.7 256 68.0
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.8e-78 296.6 254 68.5
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 5.4e-78 295.0 223 73.1
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.0e-77 293.1 261 65.9
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 2.7e-77 292.7 255 65.1
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.3e-76 290.4 255 64.3
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.5e-75 287.0 257 65.0
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-75 286.6 257 64.2
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-75 286.6 259 65.3
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 2.5e-75 286.2 257 63.4
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 7.2e-75 284.6 257 64.2
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 7.2e-75 284.6 254 65.7
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 9.5e-75 284.3 257 64.6
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.1e-74 283.1 259 64.5
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.0e-73 280.8 257 63.8
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-73 280.8 254 62.6
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.4e-73 280.4 257 63.4
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.3e-73 279.6 258 64.0
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.3e-73 279.6 257 64.2
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 3.0e-73 279.3 264 60.6
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.2e-72 277.3 257 62.3
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.4e-72 275.8 257 62.3
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 9.8e-72 274.2 257 63.0
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 9.8e-72 274.2 252 64.7
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 9.8e-72 274.2 256 63.3
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.3e-71 273.9 253 63.2
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.3e-71 273.9 253 63.2
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.2e-71 273.1 249 62.7
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 6.3e-71 271.6 261 63.6
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 6.3e-71 271.6 256 62.5
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 6.3e-71 271.6 255 62.0
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 8.3e-71 271.2 252 63.1
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 8.3e-71 271.2 254 62.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.4e-70 270.4 253 62.5
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 2.4e-70 269.6 263 60.8
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 4.1e-70 268.9 259 62.9
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.6e-69 266.9 251 63.3
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.0e-68 264.2 251 62.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.0e-68 264.2 256 60.2
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.0e-68 264.2 277 59.9
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.3e-68 263.8 259 62.5
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 6.6e-68 261.5 260 58.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.6e-68 261.5 254 60.2
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.1e-67 260.8 255 60.0
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.1e-67 260.8 255 62.4
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.1e-67 260.8 287 54.7
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.5e-67 260.4 259 61.0
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-67 260.4 254 59.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.5e-67 260.4 253 60.5
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.9e-67 260.0 258 59.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 2.5e-67 259.6 259 59.8
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.5e-67 259.6 256 61.7
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 4.3e-67 258.8 255 59.6
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.3e-67 258.8 254 59.8
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 4.3e-67 258.8 254 58.3
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 9.5e-67 257.7 255 59.6
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.2e-66 257.3 249 59.0
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.2e-66 257.3 255 59.2
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 2.1e-66 256.5 253 59.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.8e-66 256.1 247 62.3
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 3.6e-66 255.8 267 59.2
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.0e-65 254.2 258 58.1
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.4e-65 253.8 255 58.8
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.4e-65 253.8 249 61.4
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 2.3e-65 253.1 248 59.7
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 4.0e-65 252.3 259 59.1
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 4.0e-65 252.3 251 61.4
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 6.8e-65 251.5 260 60.0
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 8.9e-65 251.1 226 65.5
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 4.4e-64 248.8 249 59.8
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.7e-63 246.9 257 58.4
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 3.7e-63 245.7 255 58.0
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.4e-62 243.8 261 58.2
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.4e-62 243.8 256 59.0
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.4e-62 243.8 247 58.7
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.4e-62 243.8 255 58.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.4e-62 243.0 229 63.3
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 3.2e-62 242.7 261 56.7
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 4.1e-62 242.3 159 80.5
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 4.1e-62 242.3 154 85.1
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.1e-62 242.3 299 52.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.0e-62 241.5 158 81.0
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.2e-61 240.7 259 57.9
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 3.5e-61 239.2 250 58.8
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 3.5e-61 239.2 253 59.7
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 7.8e-61 238.0 255 58.0
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.0e-60 237.7 257 56.8
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.0e-60 237.7 257 57.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.0e-60 237.7 262 56.5
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 4.3e-59 232.3 257 56.0
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 7.3e-59 231.5 252 56.0
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 2.8e-58 229.6 254 55.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.7e-58 228.8 253 53.4
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.4e-57 227.3 253 53.0
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 2.3e-57 226.5 218 61.5
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.3e-57 226.5 373 44.0
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.2e-56 224.2 258 56.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.4e-56 222.2 178 70.8
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 9.8e-56 221.1 269 53.2
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-55 220.7 306 47.4
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.1e-51 207.6 219 58.9
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 5.8e-48 195.3 289 46.0
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 7.6e-48 194.9 256 50.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.3e-44 184.1 249 47.0
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.7e-39 167.2 279 42.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.5e-35 153.3 97 82.5
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.6e-35 152.1 126 68.3
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.1e-34 150.2 174 52.9
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.1e-33 147.9 271 44.3
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.4e-33 147.5 135 64.4
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.8e-33 147.1 182 52.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 9.0e-33 144.8 99 76.8
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.3e-31 141.0 206 49.0
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.4e-31 138.7 195 48.7
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 2.8e-26 123.2 192 44.8
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 1.5e-19 100.9 105 57.1
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 3.3e-19 99.8 123 46.3
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 4.3e-19 99.4 228 38.6
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 5.6e-19 99.0 66 84.8
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.5e-16 89.4 62 77.4
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 2.2e-15 87.0 163 38.0
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.1e-14 84.7 60 73.3
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.6e-13 80.9 61 67.2
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 2.1e-13 80.5 64 68.8
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 7.4e-11 72.0 96 49.0
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.4e-09 67.0 40 75.0
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.6e-08 63.5 173 32.9
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 1.4e-06 57.8 128 35.9
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 4.2e-06 56.2 184 32.6
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 4.2e-06 56.2 184 32.6
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 5.5e-06 55.8 44 70.5


User provided reference genes

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