Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 4.6e-152 541.2 274 100.0
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.4e-147 525.0 274 97.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-146 523.1 274 97.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.8e-143 512.7 274 95.6
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 5.1e-127 458.0 274 84.3
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.4e-126 454.9 273 83.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.7e-125 451.8 274 84.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.8e-124 449.5 274 83.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.1e-124 448.4 274 83.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 3.4e-123 445.3 274 82.1
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.2e-122 442.6 272 82.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.9e-122 442.2 274 82.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.9e-122 442.2 273 82.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.8e-122 441.8 274 81.8
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.0e-122 441.4 274 81.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 8.5e-122 440.7 267 83.1
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.5e-121 438.0 274 82.1
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.4e-121 437.2 274 81.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.2e-120 436.8 267 83.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.2e-120 436.8 274 79.2
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.6e-120 436.4 267 83.1
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.6e-120 436.4 267 82.4
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.6e-120 436.4 267 82.4
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-120 436.0 275 81.5
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 6.1e-120 434.5 275 81.1
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.4e-119 433.3 264 82.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.3e-119 432.6 275 80.7
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.0e-119 432.2 267 81.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 3.9e-119 431.8 274 78.5
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.7e-119 431.0 276 81.9
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 8.8e-119 430.6 267 81.6
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 8.8e-119 430.6 268 83.6
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.0e-118 429.5 245 90.6
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.6e-118 429.1 281 78.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.3e-118 428.7 271 80.1
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.3e-118 428.7 267 80.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 4.4e-118 428.3 271 79.7
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-117 426.4 246 88.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-117 426.4 247 87.9
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.7e-117 426.4 284 78.5
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 3.7e-117 425.2 246 88.6
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.7e-117 425.2 246 89.4
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.7e-117 425.2 275 78.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.8e-117 424.9 277 79.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 8.2e-117 424.1 274 80.3
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.1e-116 423.7 268 81.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 3.1e-116 422.2 265 80.4
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.0e-116 421.0 274 76.6
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.6e-115 419.9 257 83.3
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 5.9e-115 417.9 267 79.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.3e-114 416.8 266 79.7
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.9e-114 415.6 267 79.0
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-113 413.7 257 82.9
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.1e-113 413.7 273 78.4
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.5e-113 413.3 271 78.6
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 9.4e-113 410.6 265 80.0
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.4e-113 410.6 267 79.0
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.6e-112 408.7 247 87.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 6.1e-112 407.9 254 83.9
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 8.0e-112 407.5 268 77.6
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 8.0e-112 407.5 260 79.6
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.4e-111 406.8 267 77.9
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.8e-111 406.4 272 75.7
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.8e-111 406.4 261 79.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.3e-111 406.0 270 76.7
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.0e-111 405.6 272 75.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.0e-111 405.6 274 75.5
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 6.7e-111 404.4 266 77.1
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.7e-111 404.4 268 77.2
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 6.7e-111 404.4 266 79.3
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 8.8e-111 404.1 266 76.7
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 8.8e-111 404.1 261 78.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-110 403.7 266 77.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.2e-110 403.7 276 75.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.2e-110 403.7 268 77.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.5e-110 403.3 274 76.6
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.5e-110 403.3 267 77.9
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-110 402.9 266 76.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 2.6e-110 402.5 262 77.1
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 3.3e-110 402.1 327 68.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 5.7e-110 401.4 266 75.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 9.7e-110 400.6 250 82.4
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.7e-109 399.8 260 77.3
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.7e-109 399.8 269 77.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.7e-109 399.8 252 81.3
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.8e-109 398.3 275 74.5
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 6.3e-109 397.9 267 76.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-108 397.1 263 76.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-108 396.7 253 79.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.8e-108 396.4 278 75.2
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-107 393.3 262 76.0
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.5e-107 392.1 271 74.5
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 4.5e-107 391.7 266 75.9
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 5.9e-107 391.3 285 71.6
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 5.9e-107 391.3 269 74.0
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.9e-107 391.3 262 75.6
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.7e-106 389.8 285 71.6
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-106 389.8 265 74.7
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.2e-106 389.4 275 73.1
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 5.0e-106 388.3 265 75.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 8.5e-106 387.5 265 74.3
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 3.2e-105 385.6 272 73.5
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 9.4e-105 384.0 259 75.3
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-104 383.3 275 73.5
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.7e-104 382.5 275 74.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.8e-103 379.8 224 87.9
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.8e-101 372.5 215 86.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.8e-101 371.7 263 72.6
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.4e-100 369.4 267 74.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 9.1e-100 367.5 273 69.6
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.6e-99 366.7 240 79.2
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.6e-99 366.7 274 72.6
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 3.5e-99 365.5 232 81.0
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.2e-96 357.1 235 80.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 8.0e-96 354.4 289 65.7
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.3e-95 352.8 246 77.2
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 6.8e-95 351.3 235 79.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 8.8e-95 350.9 269 70.3
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.8e-94 347.4 261 69.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 5.0e-90 335.1 241 75.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.9e-89 333.2 261 67.0
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.8e-87 326.6 261 65.5
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.5e-86 323.6 240 71.2
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 6.4e-85 318.2 273 64.5
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.2e-80 303.9 215 75.8
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-80 303.1 179 85.5
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.0e-80 301.2 179 83.8
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.8e-78 295.0 174 85.6
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.9e-77 292.0 239 65.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.9e-76 290.0 255 60.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.0e-75 286.6 282 54.3
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.9e-74 282.3 219 68.5
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.5e-73 279.6 268 55.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.3e-73 278.1 232 63.4
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 4.0e-71 272.3 266 56.0
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.4e-70 269.2 179 75.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-68 264.2 221 64.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 6.6e-66 255.0 237 58.6
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.9e-65 253.4 175 70.9
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.2e-61 240.0 201 65.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.9e-61 238.8 163 74.2
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.4e-60 237.3 139 86.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 3.2e-60 236.1 257 56.8
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-55 219.9 171 69.6
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-51 207.6 158 69.6
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 2.3e-50 203.4 228 46.9
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.0e-43 178.7 112 79.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.3e-42 176.8 119 72.3
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 8.7e-42 174.9 120 79.2
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-32 144.4 78 88.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.9e-31 138.7 82 85.4
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.1e-27 127.1 64 95.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.2e-19 101.3 72 68.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 5.1e-18 95.9 66 75.8
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 4.1e-15 86.3 88 55.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-14 84.3 56 76.8
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.6e-11 74.3 60 65.0
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.7e-10 68.9 42 76.2


User provided reference genes

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