Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 3.1e-113 411.8 204 100.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 8.3e-106 387.1 211 91.9
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 2.8e-101 372.1 208 89.4
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 8.0e-101 370.5 209 88.0
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 5.4e-97 357.8 212 85.8
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.3e-95 353.2 208 85.1
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 5.0e-95 351.3 217 82.9
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 8.6e-95 350.5 214 85.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 3.3e-94 348.6 215 83.3
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 4.7e-93 344.7 209 84.7
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.1e-92 343.6 213 84.0
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.4e-92 343.2 211 83.4
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.8e-92 342.8 217 81.1
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 5.2e-92 341.3 223 80.7
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 5.2e-92 341.3 217 82.0
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 5.2e-92 341.3 212 82.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 8.9e-92 340.5 205 85.4
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.6e-91 339.0 205 84.4
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.6e-91 339.0 212 82.5
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 3.4e-91 338.6 212 81.6
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 4.4e-91 338.2 208 82.7
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 7.5e-91 337.4 213 82.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-90 336.7 207 83.6
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.3e-90 336.7 215 83.7
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.3e-90 336.7 214 82.2
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.3e-90 336.7 214 81.8
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.9e-90 335.5 210 81.0
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.9e-90 335.5 215 81.9
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 3.7e-90 335.1 205 83.4
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.9e-90 334.7 211 82.0
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 8.3e-90 334.0 209 82.8
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 8.3e-90 334.0 209 82.3
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.1e-89 333.6 212 81.1
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.1e-89 333.6 209 82.3
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.4e-89 333.2 212 81.6
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.9e-89 332.8 214 80.8
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.9e-89 332.8 215 80.9
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.9e-89 332.8 209 81.8
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.4e-89 332.4 215 80.0
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.2e-89 332.0 211 80.6
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.2e-89 332.0 212 80.2
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 9.2e-89 330.5 214 80.8
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-88 330.1 212 79.7
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.2e-88 330.1 211 80.6
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.6e-88 329.7 207 81.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-88 329.3 212 80.2
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.1e-88 329.3 207 82.1
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 2.1e-88 329.3 213 80.8
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.1e-88 329.3 207 82.1
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 2.7e-88 328.9 207 83.6
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 4.6e-88 328.2 214 79.0
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.6e-88 328.2 212 81.1
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.0e-88 327.8 211 81.0
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 6.0e-88 327.8 209 80.9
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 7.8e-88 327.4 207 81.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.0e-87 327.0 207 81.2
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.0e-87 327.0 213 78.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 2.3e-87 325.9 225 77.3
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.3e-87 325.9 215 79.1
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 8.6e-87 323.9 220 79.1
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 8.6e-87 323.9 214 80.4
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 8.6e-87 323.9 215 78.6
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.6e-87 323.9 215 78.6
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 8.6e-87 323.9 213 80.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 8.6e-87 323.9 213 79.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.1e-86 323.6 214 80.4
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-86 323.6 211 82.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.5e-86 323.2 210 80.5
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.5e-86 323.2 213 80.3
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.5e-86 322.4 215 78.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.5e-86 322.4 215 78.1
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 3.3e-86 322.0 216 79.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.3e-86 321.6 212 79.2
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.3e-86 321.6 212 78.8
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.6e-86 321.2 215 78.1
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.1e-85 319.3 215 77.7
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 6.2e-85 317.8 208 79.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 6.2e-85 317.8 209 78.5
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.1e-84 315.5 214 77.1
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 5.2e-84 314.7 210 77.6
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.8e-84 314.3 194 83.5
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 6.8e-84 314.3 211 78.7
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 8.9e-84 313.9 213 78.9
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.2e-83 313.5 215 77.7
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.6e-83 312.4 214 76.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.4e-83 311.6 211 76.8
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-82 309.7 213 76.5
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.9e-82 308.9 206 77.2
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 2.9e-82 308.9 193 83.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.9e-82 308.9 213 76.5
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 4.9e-82 308.1 214 77.1
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 6.4e-82 307.8 210 77.6
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.2e-81 305.4 196 79.1
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 5.4e-81 304.7 215 75.8
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 9.2e-81 303.9 205 77.1
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.6e-80 303.1 214 75.2
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.1e-80 302.8 203 78.8
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.5e-80 302.0 203 78.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.5e-80 302.0 203 78.8
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 3.5e-80 302.0 210 77.1
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.6e-80 301.6 203 78.3
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.6e-80 301.6 203 74.9
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 5.1e-79 298.1 207 73.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 8.6e-79 297.4 189 81.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.6e-79 297.4 180 83.9
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.5e-78 296.6 211 74.9
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.5e-78 296.6 207 74.9
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.9e-78 296.2 214 73.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.3e-78 295.4 208 75.0
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 4.3e-78 295.0 205 75.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 5.6e-78 294.7 213 73.7
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 9.6e-78 293.9 196 78.1
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 9.6e-78 293.9 204 77.5
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.2e-77 293.5 206 73.8
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.2e-77 293.5 203 77.3
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.2e-77 293.5 202 76.2
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.1e-77 292.7 214 74.8
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.1e-77 292.7 210 74.3
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 2.8e-77 292.4 216 72.7
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.8e-77 292.4 205 75.6
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.8e-77 292.4 212 74.5
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.6e-77 292.0 208 74.0
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.6e-77 292.0 210 74.8
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.7e-77 291.6 209 74.6
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.4e-76 290.0 177 82.5
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 4.0e-76 288.5 206 74.8
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 5.8e-75 284.6 182 79.1
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 3.8e-74 282.0 211 74.4
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 3.8e-74 282.0 211 74.4
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.6e-72 276.6 209 73.2
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.0e-72 274.6 191 73.8
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 8.7e-71 270.8 214 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.3e-70 268.9 190 71.6
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 9.6e-70 267.3 146 85.6
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.3e-69 266.9 162 79.6
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.6e-69 266.5 156 82.7
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.8e-69 265.8 155 82.6
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.8e-69 265.0 216 70.4
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 8.1e-69 264.2 171 78.9
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.4e-68 262.7 179 76.5
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.3e-68 261.5 218 65.6
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.9e-68 261.2 148 84.5
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 4.8e-61 238.4 168 74.4
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 9.0e-60 234.2 141 79.4
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.8e-58 228.8 208 63.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.2e-57 225.3 213 63.8
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 4.2e-57 225.3 175 64.6
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 2.1e-56 223.0 149 71.8
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 7.1e-49 198.0 207 58.5
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.6e-40 170.2 92 88.0
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 6.1e-32 141.7 75 90.7
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 6.7e-23 111.7 105 61.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.5e-22 110.5 105 61.9
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 7.4e-22 108.2 105 61.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 4.5e-11 72.4 95 45.3
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 4.2e-09 65.9 93 45.2
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 6.8e-07 58.5 79 49.4


User provided reference genes

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