Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.9e-221 771.5 383 100.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.7e-208 729.2 383 94.5
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 3.5e-190 668.3 383 87.2
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.8e-186 656.0 383 86.2
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 8.9e-178 627.1 385 80.3
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.0e-173 612.1 383 80.4
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.0e-173 612.1 383 80.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.3e-172 608.6 385 79.0
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.3e-172 607.4 384 79.4
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 8.1e-171 604.0 384 78.9
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.4e-161 572.0 392 74.7
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.4e-159 566.6 392 74.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 3.5e-150 535.4 367 72.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 6.7e-149 531.2 357 74.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 6.2e-147 524.6 379 69.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 5.3e-146 521.5 389 68.9
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 6.9e-146 521.2 356 73.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.5e-145 520.0 356 73.6
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 5.8e-145 518.1 392 67.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.9e-144 515.8 387 67.7
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 5.0e-144 515.0 389 67.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 8.4e-144 514.2 380 69.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 8.4e-144 514.2 374 69.5
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.1e-143 513.8 371 71.2
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.1e-143 513.8 384 68.8
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.4e-143 513.5 356 72.2
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.4e-143 513.5 365 71.0
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.9e-143 513.1 371 70.9
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.5e-143 512.7 355 73.2
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 3.2e-143 512.3 362 71.8
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.6e-142 510.0 352 73.6
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.6e-142 508.4 385 67.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.0e-141 507.3 375 69.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.0e-141 507.3 371 69.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.8e-141 506.5 393 66.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.8e-141 506.5 367 69.5
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 5.1e-141 505.0 385 67.3
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 5.1e-141 505.0 344 73.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 3.3e-140 502.3 364 69.8
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 9.7e-140 500.7 359 70.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.4e-138 496.1 373 67.8
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.1e-138 495.7 357 70.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.1e-138 495.4 356 71.3
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.2e-137 493.8 349 70.8
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.6e-137 492.7 356 69.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.6e-137 492.7 354 69.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 4.5e-137 491.9 358 69.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.7e-136 490.0 361 68.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.2e-136 489.6 365 67.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.9e-136 489.2 401 62.8
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 5.0e-136 488.4 384 65.6
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 5.0e-136 488.4 365 67.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 8.5e-136 487.6 397 65.5
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.4e-135 486.9 356 68.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.9e-135 486.5 356 71.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.2e-135 485.3 364 66.5
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.5e-135 485.0 356 68.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.7e-134 482.6 356 67.7
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 4.6e-134 481.9 366 65.6
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.8e-133 479.9 366 66.9
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 3.3e-132 475.7 400 61.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 4.3e-132 475.3 287 79.1
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 9.7e-132 474.2 363 66.1
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 8.2e-131 471.1 388 63.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.4e-130 470.3 359 66.3
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.8e-130 469.9 357 65.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 6.9e-130 468.0 364 65.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 2.6e-129 466.1 368 63.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 3.4e-129 465.7 287 77.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 7.7e-129 464.5 360 66.1
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.7e-129 464.5 360 65.3
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.9e-128 462.6 367 62.4
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.0e-128 461.8 385 65.5
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.2e-127 458.0 359 64.3
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 9.4e-127 457.6 359 64.1
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.6e-126 456.8 287 76.3
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 2.1e-126 456.4 366 62.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.7e-126 456.1 374 63.6
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.7e-126 455.3 352 65.3
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.8e-125 453.4 300 73.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 3.9e-125 452.2 374 61.8
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 6.7e-125 451.4 362 62.7
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.1e-124 450.7 368 63.0
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.5e-124 450.3 369 62.6
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.5e-124 450.3 355 64.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.6e-124 449.5 368 63.3
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 4.4e-124 448.7 323 70.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.3e-123 447.2 377 62.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-123 446.8 359 63.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.2e-123 446.4 400 58.8
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.8e-123 445.3 368 62.2
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 6.3e-123 444.9 358 64.5
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-122 444.1 352 63.9
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-122 444.1 352 63.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.1e-122 444.1 355 65.1
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.1e-122 444.1 359 61.8
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.4e-122 443.0 421 57.0
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.1e-122 442.6 372 61.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-121 439.9 352 63.6
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.3e-120 437.2 357 64.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 5.0e-120 435.3 356 61.5
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 9.4e-119 431.0 376 58.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.0e-117 427.6 379 59.9
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.8e-117 426.8 333 64.0
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 3.0e-117 426.0 374 59.9
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 4.0e-117 425.6 355 62.3
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 8.8e-117 424.5 286 72.4
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 8.8e-117 424.5 361 60.4
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.1e-116 424.1 385 59.2
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.7e-116 421.8 361 62.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.8e-115 418.7 339 62.8
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 6.3e-115 418.3 368 60.3
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.4e-114 417.2 361 61.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 9.1e-114 414.5 356 62.6
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.0e-113 413.3 484 47.3
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-112 409.8 356 61.0
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.1e-111 407.5 352 60.2
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 5.5e-111 405.2 357 60.2
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 7.2e-111 404.8 356 60.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 7.2e-111 404.8 356 60.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.2e-110 404.1 363 59.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-110 403.7 357 59.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-110 402.9 358 59.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.7e-110 402.9 358 59.8
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-110 402.5 357 59.9
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 8.0e-110 401.4 363 56.5
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-109 400.6 356 60.1
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.3e-109 399.8 357 59.4
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.3e-109 399.8 320 64.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.0e-109 399.1 357 59.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-108 397.1 341 60.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.5e-108 397.1 360 53.9
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 5.4e-106 388.7 290 61.4
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.0e-101 372.9 285 66.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.4e-98 362.1 274 68.2
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.3e-93 346.7 345 52.2
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 8.3e-91 338.2 316 54.4
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-90 336.7 251 66.5
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 6.0e-73 278.9 168 79.2
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.6e-62 243.0 287 43.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.4e-58 230.3 293 43.3
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 8.7e-56 221.9 256 50.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-54 217.6 154 66.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 3.6e-54 216.5 171 62.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.7e-41 173.7 246 43.5
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 9.0e-29 132.1 200 40.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.3e-24 117.5 138 50.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.3e-24 117.5 174 42.0
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.9e-24 116.7 72 75.0
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 9.1e-21 105.5 139 46.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 6.5e-19 99.4 283 27.2
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 4.8e-14 83.2 56 67.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.9e-10 71.2 94 45.7


User provided reference genes

Program Settings